PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B01541.1.p | ||||||||
Common Name | EUGRSUZ_B01541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16459.4 Da PI: 9.1153 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 8.9e-19 | 15 | 66 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa a+++a+ +++g+ Eucgr.B01541.1.p 15 QYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAACAYDRAAFAFRGH 66 6********.**********98887..*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.47E-23 | 15 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 15 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-27 | 15 | 74 | No hit | No description |
PROSITE profile | PS51032 | 24.171 | 15 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-35 | 15 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 16 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MVKKRGSRLQ CDQNQYRGIR RRPWGKFAAE IRDPSRNGAR LWLGTFETAE EAACAYDRAA 60 FAFRGHLAIL NFPNKQQYYA QNDYNVSGHR SYFSASPSLS SSSFSACSSS STELAPAKPS 120 RDAIEFEYLD DKLLEELLMS EINKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-29 | 15 | 73 | 5 | 63 | ATERF1 |
3gcc_A | 3e-29 | 15 | 73 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B01541.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045996.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 4e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A059D2K5 | 1e-103 | A0A059D2K5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010045996.1 | 1e-100 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B01541.1.p |
Publications ? help Back to Top | |||
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