PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01503.1.p
Common NameEUGRSUZ_B01503, LOC104427549
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 344aa    MW: 38380.5 Da    PI: 10.1148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01503.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31277334359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Eucgr.B01503.1.p 277 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGDHNHP 334
                       99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.2E-18228273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.2E-34263335IPR003657WRKY domain
PROSITE profilePS5081130.274270336IPR003657WRKY domain
SuperFamilySSF1182902.35E-27273335IPR003657WRKY domain
SMARTSM007741.9E-38275335IPR003657WRKY domain
PfamPF031062.6E-27277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEVEEANRA AVESSHRVLS LLSQPQDQVQ CRNLMLETGD AVFRFKRVVS LLNTCLGHAR  60
VRKLKKLPTP LPQKALLDNP IVRTDQSSKS LQLLPPNYPE NAIQELNTHH KASLSLGNPN  120
LELSSNGKSP LHLAQQAPSA HYHFLQQQQQ QQKLQFQQQM KHQAEMMYHR SNSGISLNFD  180
SSSCTPTMSS TRSFISSLSI DGSVANLDAN AFHLIGAARS SDQNSQHKRK CSGRGEDGSM  240
KCGSSSRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS WRKYGQKPIK GSPHPRGYYK  300
CSSMRGCPAR KHVERCLEDP SMLIVTYEGD HNHPRVPSQS ANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20268338776WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01503.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038933.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-126WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A059D2M10.0A0A059D2M1_EUCGR; Uncharacterized protein
STRINGXP_010038933.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-86WRKY DNA-binding protein 21