PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01280.1.p
Common NameEUGRSUZ_B01280, LOC104425901
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 453aa    MW: 48210.2 Da    PI: 8.5327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-124066127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++rtG+C yG+rC+F+H+p
  Eucgr.B01280.1.p 40 PGEADCIYYLRTGFCGYGSRCRFNHPP 66
                      57899********************97 PP
2zf-CCCH40.16.1e-1389113327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++++rtG Ck+G +CkF+H++
  Eucgr.B01280.1.p  89 QPVCQYYMRTGMCKFGVSCKFHHPK 113
                       789********************96 PP
3zf-CCCH37.93.1e-12133159127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++ +tG+CkyG++CkF+H++
  Eucgr.B01280.1.p 133 PGERECSYYIKTGQCKYGATCKFHHPQ 159
                       5789*********************97 PP
4zf-CCCH413.1e-13297321226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++++rtG+CkyG++C+++H+
  Eucgr.B01280.1.p 297 DQPECQYYMRTGYCKYGSSCRYHHP 321
                       689*********************9 PP
5zf-CCCH27.64.9e-09343368227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       + ++C +fa  G CkyG  Ck++H++
  Eucgr.B01280.1.p 343 GVPNCTYFAIHGVCKYGRACKYNHPM 368
                       6799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.543967IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-63966IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-104166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-54565IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-786113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.02886114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-687114IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-989113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-591112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849132160IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5132159IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-9134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549295323IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258341369IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4341368IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5345369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEPYGAPGEE PRPDPGAETG LEEHVWRLDL GGAKSYPLRP GEADCIYYLR TGFCGYGSRC  60
RFNHPPDRSS AVLGAARAGA VEYPERLGQP VCQYYMRTGM CKFGVSCKFH HPKQGVGSAI  120
PVTLNYYGFP LRPGERECSY YIKTGQCKYG ATCKFHHPQP AGIQFPTPGA APQVAPVAAP  180
MVASAVYPTA QSPAVHSSQQ YGVVVARSPV LSSYGPYGSV LLPPSMVPYH SWSPYPATLG  240
QVASSSTQPS TGSTSVYGVT QLSPPVSGFP GQYQPLLHSF GASSGDQKEQ SLPHRPDQPE  300
CQYYMRTGYC KYGSSCRYHH PTDLVPQEAS VWLSPIGLPL RSGVPNCTYF AIHGVCKYGR  360
ACKYNHPMGM LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSELRPDL ISGSLREASS  420
TRSSSSTSAS SASIGSVLSK SENASHSKSQ KS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037077.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ6NPN31e-142C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A059D2230.0A0A059D223_EUCGR; Uncharacterized protein
STRINGXP_010037077.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]