PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B00866.1.p | ||||||||
Common Name | EUGRSUZ_B00866, LOC104422141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 21931.1 Da PI: 10.5263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+v+++G g+W++ ++ g+ R++k+c++rw++yl Eucgr.B00866.1.p 13 KGAWSEQEDQKLIDYVQKHGEGNWNSLPKAAGLLRCGKSCRLRWLNYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.B00866.1.p 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.617 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.51E-12 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.246 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 63 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.11E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRNPCCDKQK TNKGAWSEQE DQKLIDYVQK HGEGNWNSLP KAAGLLRCGK SCRLRWLNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLLSKGI 120 IHRRPSAAKI KSSTEDKTVH QSSAAISIKE KGVSPDGDRL DLKLGVSGGP AKHSKHAQSK 180 EINGGKPYTT LLLFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 12 | 115 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B00866.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032684.1 | 1e-142 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 1e-71 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A059CZV3 | 1e-140 | A0A059CZV3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032684.1 | 1e-141 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 5e-73 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B00866.1.p |
Entrez Gene | 104422141 |
Publications ? help Back to Top | |||
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