PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B00865.1.p | ||||||||
Common Name | EUGRSUZ_B00865, LOC104422134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24145.4 Da PI: 8.4956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl Eucgr.B00865.1.p 14 KGAWTKQEDQKLIDYIHKHGEGCWRSLPQAAGLLRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.B00865.1.p 67 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.75 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.444 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.63E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRKPCCEKKG TMNKGAWTKQ EDQKLIDYIH KHGEGCWRSL PQAAGLLRCG KSCRLRWVNY 60 LRPDLKRGNF GEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNT HLRRKLMQMG 120 IDPNNHRPRP AVSVPNKSVG SDHSSTCKPE NSQEEEDIGS VLQCSSKPES NTGFLPDLNL 180 ELTIGPPLIE ERLQLSHIDS TQLSFSNFST VIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B00865.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032675.1 | 1e-158 | PREDICTED: transcription factor MYB3 | ||||
Swissprot | Q9S9K9 | 1e-79 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A059D087 | 1e-157 | A0A059D087_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032675.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-82 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B00865.1.p |
Entrez Gene | 104422134 |