PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00724.1.p
Common NameEUGRSUZ_B00724, LOC104421675
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 358aa    MW: 39975.5 Da    PI: 7.1868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00724.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.81.2e-5451311129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+ kv++  ++  ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++
  Eucgr.B00724.1.p   5 LPPGFRFHPTDEELITCYLTCKVSDIGFTS-KAIADVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIF 96 
                       79*************************999.88***************988999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +g lvg+kktLvfykgrap+gek++Wvmheyrle
  Eucgr.B00724.1.p  97 R-GGILVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                       *.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-634151IPR003441NAC domain
PROSITE profilePS5100559.2435151IPR003441NAC domain
PfamPF023656.2E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGNLPPGFR FHPTDEELIT CYLTCKVSDI GFTSKAIADV DLNKCEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGI LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHPFKSTK EEWVVCRVFQ KTAVKKPQPA LSSEQSPDSP GDTNSALHDQ  180
YGDIELSNSL TGMPNNASSG FADINLAQNY SNHSDSTAYN MQSNPHMNMM NNWPSSARET  240
IAGLPSLPWP STLLSSNLAV NALLLKALQV RNNGNYSHQP RDQAATLLGT YDYSNHLQPQ  300
QQAQGASHHH HNLFGMNDVT SSTSFNVSSS SKDLESSVPD HQQPEQPFSW TPLREGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54415116165NO APICAL MERISTEM PROTEIN
1ut4_B2e-54415116165NO APICAL MERISTEM PROTEIN
1ut7_A2e-54415116165NO APICAL MERISTEM PROTEIN
1ut7_B2e-54415116165NO APICAL MERISTEM PROTEIN
4dul_A2e-54415116165NAC domain-containing protein 19
4dul_B2e-54415116165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00724.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032017.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A059D0650.0A0A059D065_EUCGR; Uncharacterized protein
STRINGXP_010032017.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-102NAC domain containing protein 58