PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00645.2.p
Common NameEUGRSUZ_B00645, LOC104421043
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 566aa    MW: 61416.1 Da    PI: 8.5655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00645.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.41.3e-18269318255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI++Lq
  Eucgr.B00645.2.p 269 RSKHSATEQRRRSKINDRFQTLRSLIPNS----DQKRDKASFLLEVIEYIQYLQ 318
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-23264336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18266334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.479267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-15269321No hitNo description
PfamPF000103.7E-16269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MMELPQPRPF GTEARKATHD FLSLCSHSTL HHQDPRQPPS QDSFLKTHDF LGKTAAKEEA  60
TSEISSSLER PPPPAPPGPP PSVPPPQSVE HVLPGGIGTY SISHISYFNN QNPPKPEATI  120
YTVAQASSTD RTDENSNCSS YTNSGFTLWE ESAAKKGKTG KENVPSASVR EAEVKLGPWP  180
ASERPSHSSS NNNHRNSFSS LSSSQPSGAK NKSFMDMIRS AKSGSNQEDE LDDDDGEFLL  240
KKETSPIPKG ELRVKVDGKS SDQKANTPRS KHSATEQRRR SKINDRFQTL RSLIPNSDQK  300
RDKASFLLEV IEYIQYLQEK VTNYEGSFQG WSQEPANMMP LRNGQRPTDN YVDQSRNITS  360
GSSPALVFAA KVDENNIAMA PAVFRKAKNP LEPEMGSVTA FKSVEHHPGM TNRAVPFPMS  420
LQPNISNCVR GSGAVARGDP NLENNASQPL TQISRIKSLT NECSASTDKL KEEELTIEGG  480
TISISNVYSQ GLLNRLTQAL QSSGVDLSQA SISVQIDLGK QANGRNAASS SLPKDTEARN  540
QGVTRPRAAG EIADPALKKL KAGKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00645.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031175.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A059CZX00.0A0A059CZX0_EUCGR; Uncharacterized protein
STRINGXP_010031175.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-107bHLH family protein