PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00608.1.p
Common NameEUGRSUZ_B00608, LOC104434364
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 406aa    MW: 44419.3 Da    PI: 7.12
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00608.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.6e-30631933121
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec..eaesssssasnsssg 88 
                       g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl ++k+ i+ l+ ++ +++     +     +++sss++s++s  
  Eucgr.B00608.1.p  63 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDASKQDIDRLPPLQLPPNfgqfhQ-QilFPHESSSANSQPSLI 154
                       79*************************************************************88888554431.145333333333333333 PP

               TCP  89 ......kaaksaakskksqksaasalnlakesrakarar 121
                             ++ ++ +++ k ++++  ++  + es+a ar++
  Eucgr.B00608.1.p 155 spflptSSTTFLKHGIKITENSVDHRVNDSESSAMARSK 193
                       588886555555566666666666666666888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.4464122IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2864194IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNPIPRGGGG GGGGGGGGFQ SAKQEEEKNE TSRSLSRLAP PSTSRHWSGF RNPRIVRVSR  60
SFGGKDRHSK VCTIRGLRDR RIRLSVPTAI QLYDLQDKLG LSQPSKVIDW LLDASKQDID  120
RLPPLQLPPN FGQFHQQILF PHESSSANSQ PSLISPFLPT SSTTFLKHGI KITENSVDHR  180
VNDSESSAMA RSKFWNIDTY NTLRTKDKEV ETDDHNGQPL SEKGKWIEND AVHGHLGSSV  240
NSHHGQVSAQ NFFPIVSYSL SGSTLPYSYN NQWEPSNLSL SQLGTHGFQL LPDQNPLNSV  300
SVASSSALPS ATPQLYFCPS AAMTPIFPSY PSYLTPTVET DARQLNHLHL LSSSSQQHIL  360
PTSLLPSLQL ISSPMGLPFQ TSTSAKFLHR QDDDESEEDV DGNGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1769123155Putative transcription factor PCF6
5zkt_B2e-1769123155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00608.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045604.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A059CZF40.0A0A059CZF4_EUCGR; Uncharacterized protein
STRINGXP_010045604.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5