PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00522.1.p
Common NameEUGRSUZ_B00522, LOC104419901
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 381aa    MW: 43465.4 Da    PI: 6.6264
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00522.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-23953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      kr en+snr+vt+skRr+gilKKA+ELS+LCd+++ +++fs+t+k
  Eucgr.B00522.1.p  9 KRLENSSNRHVTYSKRRTGILKKAKELSILCDIDIVLLMFSPTDK 53
                      789***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.161161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-27295IPR002100Transcription factor, MADS-box
CDDcd002661.04E-26282No hitNo description
PRINTSPR004041.9E-18323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-201156IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRVKLKIKR LENSSNRHVT YSKRRTGILK KAKELSILCD IDIVLLMFSP TDKPTLFHGE  60
RSNIDEVIAK FAQLTPQERA KRKLESLEVL KKTFKKLDHD VNIQDFLGTS NQTVEEMTNQ  120
VRLLQSQLAE TQKRLSCWRN PEKIDDIEQL RQMEDSLRAS INHIRQHKEN VGKHQTMSLE  180
RTNQFENAMP LPFIMGGMPE AQPLSWLPMN ENQHLLFQND PHYLPEGPID GSTDVSLPGC  240
SAYFGVDRHP DIGNLGQVQN MVQEGCILNE LNRNGCLSLQ VGEQYPYAPY GNLTLPEDRK  300
MKQEMGMNFQ GHHVDYQVAS NKMEQEIEMS LQGHPIDYPV TSNIELQRPI YDNGHHPWCS  360
APAPCGIAMY NGTTFNQQSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-16192190MEF2 CHIMERA
6byy_B8e-16192190MEF2 CHIMERA
6byy_C8e-16192190MEF2 CHIMERA
6byy_D8e-16192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00522.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030035.10.0PREDICTED: agamous-like MADS-box protein AGL65
RefseqXP_018723073.10.0PREDICTED: agamous-like MADS-box protein AGL65
SwissprotQ7X9I01e-102AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A059CYQ90.0A0A059CYQ9_EUCGR; Uncharacterized protein
STRINGXP_010030035.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-105AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]