PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00300.1.p
Common NameEUGRSUZ_B00300
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 409aa    MW: 46510 Da    PI: 4.9698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-15165211148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT++Ed ll ++v+q+G  +W+ ++++++ gR +kqc++rw+++l
  Eucgr.B00300.1.p 165 KGQWTAQEDWLLTQLVEQFGLSRWSYVSQMLP-GRLGKQCRERWHNHL 211
                       799*****************************.*************97 PP
2Myb_DNA-binding56.18.4e-18217259145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +  WT+eE++++++a+++ G++ W+ Ia++++ +Rt +++k++w+
  Eucgr.B00300.1.p 217 KETWTEEEEKIIIQAHTEIGNK-WSEIAKRLP-NRTQNSIKNHWN 259
                       578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.666160211IPR017930Myb domain
SMARTSM007174.2E-12164213IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-29164258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-26166219IPR009057Homeodomain-like
CDDcd001672.30E-11168211No hitNo description
PfamPF139219.2E-16168225No hitNo description
PROSITE profilePS5129425.078212266IPR017930Myb domain
SMARTSM007171.8E-15216264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-21220265IPR009057Homeodomain-like
CDDcd001673.84E-6227262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEFQTKLDED LASHQVSLSD TGKRNETTLA TTVTLKRSFL QDFHLVEQFF LSGSPSDLAY  60
EKQITCFDLP MFIYTCKQFT DGQGVVMDNF EVGGIDTASK YDTSHMFFDF QQNVDPVNFV  120
ASGEVSRTSD EYGYYKNNFT SMSKEVSSLS ARRTCEVCKR SQASKGQWTA QEDWLLTQLV  180
EQFGLSRWSY VSQMLPGRLG KQCRERWHNH LRPNIKKETW TEEEEKIIIQ AHTEIGNKWS  240
EIAKRLPNRT QNSIKNHWNA TKRRQFTKRK RRSKYPRASP LQEYIQSLNL SASKRFPLQS  300
SGGDRATAVN NDASRNKSAS SSDDRLVQNI IKFGELPEQL FDEKLLQEGC ALDSLLGDLP  360
CPPDATVEDG GGGGEELGME MLDMDSLLES EELNEDLDLV EMITQIYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-421652654104C-Myb DNA-Binding Domain
1msf_C3e-421652654104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261270KRRQFTKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045548.10.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L22e-78MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A059CYD40.0A0A059CYD4_EUCGR; Uncharacterized protein
STRINGXP_010045548.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-60myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]