PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00161.1.p
Common NameEUGRSUZ_B00161, LOC104417216
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 491aa    MW: 52177.5 Da    PI: 5.7362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-12154176426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e C+++ +tGtCk+G++CkF+H+
  Eucgr.B00161.1.p 154 EDCSYYIKTGTCKFGSNCKFNHP 176
                       89********************9 PP
2zf-CCCH24.25.7e-08200224327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       + +C++++  G Ck+G  C+F+H++
  Eucgr.B00161.1.p 200 QTECKYYLNKGGCKFGKACRFNHSR 224
                       568********************95 PP
3zf-CCCH34.24.4e-11245270227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f++rtG Cky ++C+++H++
  Eucgr.B00161.1.p 245 GEKECPFYMRTGSCKYAANCRYNHPE 270
                       7899********************96 PP
4zf-CCCH26.61e-08377403127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f++tG Ck+ ++Ck++H++
  Eucgr.B00161.1.p 377 PGQPDCSYFLKTGDCKFKSNCKYHHPK 403
                       5789*********************96 PP
5zf-CCCH33.38e-11425449327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +  C +++r+G+Ck+G+ CkF H++
  Eucgr.B00161.1.p 425 QNVCLYYSRYGICKFGPACKFDHPE 449
                       568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.746150178IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6150178IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9154176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5156175IPR000571Zinc finger, CCCH-type
SMARTSM003560.003197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577197225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5200226IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4203224IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197243271IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5245271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4249269IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4376403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568376404IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6378403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5381405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5419447IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5422449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474422450IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8425449IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MITLFSRILG GKATADGPTM ATPPDHGGAG AGDGDGACPD APPQPAAEPD PPPSDPDRAA  60
EELWRLDVGG ASEPLVEEEG GGGGGDGGGG GAAEEGSGAP GSEDGGDGGG GGGGKSGGES  120
DGGEKGEDGD SESDDEKREE RRKFNKYPVR PEAEDCSYYI KTGTCKFGSN CKFNHPVRRK  180
NQVAKDKMKE KEEPKERVGQ TECKYYLNKG GCKFGKACRF NHSRPKTFVP PYQGLNFLGL  240
PIRPGEKECP FYMRTGSCKY AANCRYNHPE PSAGGGDPPS EYGNGGSASL QSASQFPVAS  300
WSSPGTLNDA APFVPVMYSP THAVSSHNAE WNGYQFPVNP PGPVVHPPSA YIMKHPVTDI  360
HIYPHHQMVI DEFPERPGQP DCSYFLKTGD CKFKSNCKYH HPKDRISKSP PVVLSDKGLP  420
LRPDQNVCLY YSRYGICKFG PACKFDHPEH LTSSTISELD QPSSIGDSAT SDGPLMNGTR  480
NSSEAIQQSV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00161.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026830.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-128C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A059CYA50.0A0A059CYA5_EUCGR; Uncharacterized protein
STRINGXP_010026830.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-123C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]