PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B00106.1.p

Common Name

EUGRSUZ_B00106

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YC

Protein Properties

Length: 270aa MW: 30021.9 Da PI: 5.6746

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B00106.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	149.6	6.4e-47	99	196	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misae acelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd Eucgr.B00106.1.p 99 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAE-------ACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 184 89***998899**************************98.......7************************************ PP NF-YC 91 flvdivprdelk 102 flvdivprde+k Eucgr.B00106.1.p 185 FLVDIVPRDEIK 196 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.54E-29	80	186	IPR009072	Histone-fold
Pfam	PF00808	7.7E-13	121	177	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.8E-28	122	192	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEKEKKESTG TVQFRPSLLF SCRSYSRLTS IVSGKSADSE PPWRIFPRTH QAISGKVEDF 60 AVAGGGMDPN QQPHQPPPPY LPPQPGPPYN HLMQQQQQQL QMFWSYQRQE IEQVNDFKNH 120 QLPLARIKKI MKADEDVRMI SAEACELFIL ELTIRSWLHA EENKRRTLQK NDIAAAITRT 180 DIFDFLVDIV PRDEIKEEAM GGALGAPVVG PPASGVPYYY PPMGQPAAPG AVYMQQQPPP 240 PPSQAWQSVW QNAAADDGSY GQGNPDGQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-47	107	192	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B00106.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	8e-62	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026475.1	1e-107	PREDICTED: nuclear transcription factor Y subunit C-1
Swissprot	Q9FMV5	3e-84	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A059CY95	0.0	A0A059CY95_EUCGR; Uncharacterized protein
STRING	XP_010026475.1	1e-106	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-64	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Eucgr.B00106.1.p

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]