PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00048.1.p
Common NameEUGRSUZ_B00048, LOC104434196
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 360aa    MW: 38474.8 Da    PI: 5.8781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46e-14139190155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i   A++++k+L+
  Eucgr.B00048.1.p 139 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YSQRGDQASIIGGAINFVKELE 190
                       79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-14137194No hitNo description
SuperFamilySSF474593.01E-17137204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.815138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-14138194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MALEAVVYPQ DPFGYSRDQY YALAGGLPEL ADEKTFLDAF NDDPTANNAC CWDYYSSSSA  60
NTSAMHGVSI SSGQWPALDP NSSSPETTCA AAAAAAEAGS GQPSPSAAAA GGGGGGGGGG  120
RRKRRRCRSS KNKEEIENQR MTHIAVERNR RKQMNEYLAV LRSLMPPSYS QRGDQASIIG  180
GAINFVKELE QLLQSMQTHK SKPKPLQDLA AAANNNNDNS NNDVASPFAE FFSFPQYSTR  240
LASAPCGGPT EPATALEDRS GGPHPQWVVA DIEVTMVESH ANMKIFSKKR PRQLLQLVAG  300
LQGLRLTVLH LNVTTVDDSV LYSVSVKVEE GCHLNTVDEI AAAVHELLRR IEEGAGAFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121125RKRRR
2139150RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6612337e-32KM661233.1 Ananas bracteatus clone 42754b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045474.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T41e-94BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A059CY470.0A0A059CY47_EUCGR; Uncharacterized protein
STRINGXP_010045474.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]