PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02924.1.p
Common NameEUGRSUZ_A02924, LOC104415706
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 282aa    MW: 30715.2 Da    PI: 6.9236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02924.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20149200256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +++GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g+
  Eucgr.A02924.1.p 149 HFRGVRQRP-WGKYAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAYRMRGA 200
                       69*******.***********9987..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31148208IPR001471AP2/ERF domain
PROSITE profilePS5103223.841149207IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23149209IPR016177DNA-binding domain
CDDcd000188.24E-29149208No hitNo description
PfamPF008475.9E-14149199IPR001471AP2/ERF domain
SMARTSM003801.9E-36149213IPR001471AP2/ERF domain
PRINTSPR003671.8E-10150161IPR001471AP2/ERF domain
PRINTSPR003671.8E-10173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSQSTMLVAE ETIFSPPPLY NQRNHPHDGA SGLNPFLTQE HWGDLPLQLN DSDDMLIYNS  60
LHDALHSGWS PFDSDITAVH PQPQPHPLLP AASVPTSFAS DDALSLHNAF ASYNYPIEVA  120
GGVVNSERRE SDFARDYGFH RSSFCKGRHF RGVRQRPWGK YAAEIRDPAK NGARVWLGTY  180
ETAEEAALAY DRAAYRMRGA KALLNFPHRI GSGEPAPVRV TAKRKDSEAK GAVAGSAKKP  240
KGTATAPAVE ADGGAGLRRE GERLDAFQQG LLRLSEELLV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-37145214170ATERF1
3gcc_A6e-37145214170ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02924.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025350.10.0PREDICTED: ethylene-responsive transcription factor 2
TrEMBLA0A059DKG30.0A0A059DKG3_EUCGR; Uncharacterized protein
STRINGXP_010025350.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-41ethylene responsive element binding factor 1