PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A02857.1.p | ||||||||
Common Name | EUGRSUZ_A02857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25582.4 Da PI: 8.9808 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 36 | 107 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.................kapskKlsKaeiLekAveYIksLq 55 r+++h e+Er+RR+++ s + Lr+ lP + + s+K s ++ +Av+YIk+Lq Eucgr.A02857.1.p 36 RKKKHREVERQRRQEMASLCASLRSKLPLEFikvkdlitfrvfalffcACASGKRSTSDHMNEAVNYIKHLQ 107 7899*************************999***************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.62E-7 | 34 | 110 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-12 | 34 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.04 | 35 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-11 | 36 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-11 | 36 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MESSSSIFKV VGNRRRKFSV TNYHERAGQD GDHGDRKKKH REVERQRRQE MASLCASLRS 60 KLPLEFIKVK DLITFRVFAL FFCACASGKR STSDHMNEAV NYIKHLQAKI GELGFKRDEL 120 KSIHSLAALG SPCSNSSCLT TFTVNSCCEI VEIVISQSIR EKDFLLSTVL DLLLQQGLDV 180 VSCFSSQAYD KIVHTIRCEL AYGNGSFDLT HLKGELKELL IRKWNS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A02857.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061822.1 | 1e-133 | PREDICTED: transcription factor bHLH36 | ||||
TrEMBL | A0A059DK50 | 1e-165 | A0A059DK50_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061822.1 | 1e-132 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A02857.1.p |