PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02846.3.p
Common NameEUGRSUZ_A02846
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24653.3 Da    PI: 9.1473
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02846.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien + rq tfskRrng++KKA+ELSvLCdaevaviifs++g+lye+ss
  Eucgr.A02846.3.p  9 KRIENATSRQATFSKRRNGLMKKAFELSVLCDAEVAVIIFSQRGRLYEFSS 59
                      79***********************************************96 PP
2K-box69.51e-2379172799
             K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       k+   e+ + +l++e+a + ++ie L+ ++R++lG++Les+s+ eLq++  qLe+sl++iR kK++l++eqie+l+ ke  l een +L +k+
  Eucgr.A02846.3.p  79 KKaSMEQYMLHLKHEAADMSRKIELLEASKRKFLGQGLESCSVDELQEISVQLERSLSTIRVKKDQLFKEQIEQLKAKEVFLIEENSRLCEKY 171
                       334667788899*****************************************************************************9987 PP

             K-box  99 e 99 
                        
  Eucgr.A02846.3.p 172 G 172
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
CDDcd002654.57E-42276No hitNo description
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-33379IPR002100Transcription factor, MADS-box
PfamPF003194.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.69587177IPR002487Transcription factor, K-box
PfamPF014866.4E-2489171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARGKIQMKR IENATSRQAT FSKRRNGLMK KAFELSVLCD AEVAVIIFSQ RGRLYEFSSS  60
NMQKTIERYH QYAKEDTGKK ASMEQYMLHL KHEAADMSRK IELLEASKRK FLGQGLESCS  120
VDELQEISVQ LERSLSTIRV KKDQLFKEQI EQLKAKEVFL IEENSRLCEK YGEKGMPWQS  180
TSSVQPKEAR IHSLSSGSTD VETELFIGLP EMRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21173173Myocyte-specific enhancer factor 2B
1tqe_Q3e-21173173Myocyte-specific enhancer factor 2B
1tqe_R3e-21173173Myocyte-specific enhancer factor 2B
1tqe_S3e-21173173Myocyte-specific enhancer factor 2B
6c9l_A3e-21173173Myocyte-specific enhancer factor 2B
6c9l_B3e-21173173Myocyte-specific enhancer factor 2B
6c9l_C3e-21173173Myocyte-specific enhancer factor 2B
6c9l_D3e-21173173Myocyte-specific enhancer factor 2B
6c9l_E3e-21173173Myocyte-specific enhancer factor 2B
6c9l_F3e-21173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02846.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716225.11e-157PREDICTED: MADS-box protein SOC1
RefseqXP_018716231.11e-157PREDICTED: MADS-box protein SOC1
RefseqXP_018716232.11e-157PREDICTED: MADS-box protein SOC1
RefseqXP_018716234.11e-157PREDICTED: MADS-box protein SOC1
SwissprotQ9FIS12e-80AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A059DK351e-155A0A059DK35_EUCGR; Uncharacterized protein
STRINGXP_010061717.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-82AGAMOUS-like 42