PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02814.1.p | ||||||||
Common Name | EUGRSUZ_A02814, LOC104415498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17508.9 Da PI: 8.4927 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 7 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Gasnv k+++++p++ r ++++sl++e+++r++dPvyG+vg+i+ l+ q++++++e Eucgr.A02814.1.p 7 RCAACKYLRRRCPPDCIFSPYFPSNDPQRFACVHRIYGASNVGKMIQQTPTQMRAQVADSLYFESRCRIQDPVYGCVGIISLLHLQIHNAESE 99 6******************************************************************************************** PP DUF260 94 lallkeel 101 la++k+++ Eucgr.A02814.1.p 100 LAKVKAQI 107 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.009 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-38 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSTISSRCAA CKYLRRRCPP DCIFSPYFPS NDPQRFACVH RIYGASNVGK MIQQTPTQMR 60 AQVADSLYFE SRCRIQDPVY GCVGIISLLH LQIHNAESEL AKVKAQIAFL NSDANREPSF 120 RPQLEGASNV NNLWSAQSSV EQHQIGSSTT HGPLAFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-35 | 8 | 100 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-35 | 8 | 100 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02814.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010025110.1 | 1e-116 | PREDICTED: LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 2e-52 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A059DJZ9 | 1e-114 | A0A059DJZ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010025110.1 | 1e-115 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 9e-55 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02814.1.p |
Entrez Gene | 104415498 |