PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A02796.1.p | ||||||||
Common Name | EUGRSUZ_A02796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27080.2 Da PI: 7.8999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.7e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l ++++++G +W++++ g+ R +k+c++rw +yl Eucgr.A02796.1.p 15 KGLWSPDEDQRLRNYIHKHGYSCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.1 | 9.8e-19 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+e +++++++lG++ W+ Ia++++ gRt++++k++w++yl Eucgr.A02796.1.p 68 RGAFTVQEEETILNLHHLLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 113 89********************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.275 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.127 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-17 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.17E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGCKSVEKPK ARHRKGLWSP DEDQRLRNYI HKHGYSCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGA FTVQEEETIL NLHHLLGNKW SQIAQHLPGR TDNEIKNHWH SYLKKKINIK 120 ADESHLQMPS NSDSVGSPNS TDFPSDHTQS SDTTEYTKSS ASQIPKIFNP TKEGESSLPT 180 LLFEEWLSLD NSPGGSFTNH AESQDQISGN GLVQCLSGDD LCILSKSGCS PEEVISREIL 240 K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A02796.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061134.1 | 1e-157 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 5e-56 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A059DJX6 | 1e-178 | A0A059DJX6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061134.1 | 1e-156 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52260.1 | 6e-63 | myb domain protein 19 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A02796.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|