PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02754.1.p
Common NameEUGRSUZ_A02754, LOC104448442
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 652aa    MW: 70191 Da    PI: 6.3105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02754.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.32.7e-1032806512374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++ L+e+A+a+ +g    a+++L+rls   +p+g++  +l  y++ AL++r++        a +p + +e  +++++++++ ++e+sP++k++
  Eucgr.A02754.1.p 280 RQSLMEAATAIYEGRVDVASEILTRLSAVPNPKGNSEPKLMEYMLSALKSRVSP-------ADNPPPVAELFTKDHVSSTQSLYELSPCFKLG 365
                       689**************************************************9.......33444444445999****************** PP

              GRAS  95 hltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.. 181
                       +++aN +Ilea++++   +++H+iDfd++q +Q+++Ll+aL++R+ g p +l+iT++++   + +e+l+ +++r +++A+++gv++ fn++  
  Eucgr.A02754.1.p 366 FMAANLMILEAASEQpstNKLHVIDFDVGQEGQYINLLHALSTRQPGIPsTLKITTLAD-GFNGEERLRMVRDRVSELAAQMGVRLVFNIVsq 457
                       *************9999999************************9665549********.44499*************************966 PP

              GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +++l++l+ ++L ++p+E+laVnl+++l+r++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r  eal yy al++sle++
  Eucgr.A02754.1.p 458 KVSELSELSRDSLGCEPDEVLAVNLAFKLYRMPDESVSMENPRDELLRRVKGLAPRVVTLVEQEMNGNTAPFATRAGEALGYYGALLESLEST 550
                       66699999************************************************************************************* PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdr 365
                       +pr+s++r   E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pl++++a+++k+ l+  +  + g++v+ee+g +++gW +r
  Eucgr.A02754.1.p 551 VPRDSSDRGRAEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLGQHVAESMKARLESGNrvNPGFTVKEENGGVCFGWLGR 642
                       **************.****************************************************98877789****************** PP

              GRAS 366 pLvsvSaWr 374
                       +L+++SaWr
  Eucgr.A02754.1.p 643 TLTVASAWR 651
                       ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.794253629IPR005202Transcription factor GRAS
PfamPF035149.2E-101280651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSSGFSGGSG GGGPEFYTAA GGMSARSIAS AMSSVNGNAA SQSPFRSQPQ FGAGIFLEPN  60
SQMAPQPAQP QPGLVGKRTL MEFQAQHQQQ QQQHQHQQNQ ALSNLILRSV RSKISPRSSP  120
ISHLDFSAAV SSPDVMSSLS ALSSPAGFSA QRYGLPILQQ LRPQPIHLGN GAIHVSNQAL  180
GGVSFANVLQ NRANPHQAEP ENKMMNRLQE LEKQLLDDDE EGDGDAVSVI TNANSEWSET  240
IQSLISPGQK QISPSPTSSS SSSSPSSSLS VPSPVPICSR QSLMEAATAI YEGRVDVASE  300
ILTRLSAVPN PKGNSEPKLM EYMLSALKSR VSPADNPPPV AELFTKDHVS STQSLYELSP  360
CFKLGFMAAN LMILEAASEQ PSTNKLHVID FDVGQEGQYI NLLHALSTRQ PGIPSTLKIT  420
TLADGFNGEE RLRMVRDRVS ELAAQMGVRL VFNIVSQKVS ELSELSRDSL GCEPDEVLAV  480
NLAFKLYRMP DESVSMENPR DELLRRVKGL APRVVTLVEQ EMNGNTAPFA TRAGEALGYY  540
GALLESLEST VPRDSSDRGR AEEGLSRKLG NSVACEGRDR VERCEVFGKW RARMGMAGFE  600
LKPLGQHVAE SMKARLESGN RVNPGFTVKE ENGGVCFGWL GRTLTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-392566512419Protein SHORT-ROOT
5b3h_E6e-392566512419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02754.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-177SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP40.0A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010060571.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-169SCARECROW-like 8