PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02669.1.p
Common NameEUGRSUZ_A02669, LOC104447803
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 359aa    MW: 39211.8 Da    PI: 4.3348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02669.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20126177156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       ++++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a++kl+g+
  Eucgr.A02669.1.p 126 KKFRGVRQRP-WGKWAAEIRDPT----RrVRLWLGTYDTAEEAAMVYDNAALKLRGP 177
                       59********.**********84....34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF123001.5E-546123IPR022077ATP-dependent RNA helicase RhlB
PROSITE profilePS5103223.96127184IPR001471AP2/ERF domain
PfamPF008472.7E-13127176IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22127184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-30127184IPR001471AP2/ERF domain
SMARTSM003808.4E-40127190IPR001471AP2/ERF domain
CDDcd000181.02E-32128184No hitNo description
PRINTSPR003674.0E-10128139IPR001471AP2/ERF domain
PRINTSPR003674.0E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016817Molecular Functionhydrolase activity, acting on acid anhydrides
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDQSILCPIK YTEHRSLTRK LLSKQLRNDV PNPPRTVRIS VTDPYATDSS SDDDDEGDAA  60
ESFFRRQRVK RYVSEIKFEA ASRSGGGSSG GGGRRRSCSG GESAPADLRT RPSLKVSPAA  120
AAAGGKKFRG VRQRPWGKWA AEIRDPTRRV RLWLGTYDTA EEAAMVYDNA ALKLRGPDAQ  180
TNFATPSPSK EPSPENEILA ASSLSGYESG EESHNLSSPT SVFHFRTHSN NSADADPAGP  240
PPQEPADEAR DYPECEGETS LADSSEYLRL DLPFLDNFYN NFDSPLEPSL FEDARNPALP  300
ESSMLSLSDD PSDVFTSDVF LDATSSDDFG SLPMDICQVD DYFDEIGDWL SSDPFPVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19123183162ATERF1
3gcc_A2e-19123183162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02669.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059824.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A059DIH00.0A0A059DIH0_EUCGR; Uncharacterized protein
STRINGXP_010059824.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-45cytokinin response factor 4