PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02638.1.p
Common NameEUGRSUZ_A02638, LOC104447521
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 265aa    MW: 30242.1 Da    PI: 6.0535
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02638.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.22.1e-4241381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lppGfrF Pt+eelv++yL++k+eg++      +++vi+ vdiy+++P+dLp+     + ++ ++w+fF++r++++ +g r++r t++gyWka
  Eucgr.A02638.1.p   4 LPPGFRFFPTEEELVSFYLRNKLEGTRqalhGLIHRVIPVVDIYEFHPSDLPQfagdLCCGDPEQWFFFIPRQESEYRGGRPRRLTTTGYWKA 96 
                       79************************95543222347999************645652234677***************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg+   v+s +++ vg+k+t+vfy+grap+g+kt+W m+eyr+
  Eucgr.A02638.1.p  97 TGSPSLVYS-SNRIVGVKRTMVFYTGRAPSGVKTEWKMNEYRA 138
                       *********.8999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-493165IPR003441NAC domain
PROSITE profilePS5100548.4224165IPR003441NAC domain
PfamPF023657.6E-235137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDLPPGFRF FPTEEELVSF YLRNKLEGTR QALHGLIHRV IPVVDIYEFH PSDLPQFAGD  60
LCCGDPEQWF FFIPRQESEY RGGRPRRLTT TGYWKATGSP SLVYSSNRIV GVKRTMVFYT  120
GRAPSGVKTE WKMNEYRATE GEASSPEEIP VVPRHEFSVC RVYKKTKTLR SFDRRPMGEI  180
IRSSQTFQQN TMPNDDRHPL EMTSSRRGSS PPMERASSSP DSSCASKDLG TIPLQAGGLG  240
SCIDMEMLPD DSELFLQDWD QFWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-33316514168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02638.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059552.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR32e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059DJG00.0A0A059DJG0_EUCGR; Uncharacterized protein
STRINGXP_010059552.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]