PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02625.1.p
Common NameEUGRSUZ_A02625, LOC104447367
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 279aa    MW: 30480.6 Da    PI: 6.8027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02625.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3108.53.1e-3472171199
                       EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       f+k ltpsdv+k++rlv+pk++ae+h       e +++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++d+ + +
  Eucgr.A02625.1.p  72 FEKPLTPSDVGKLNRLVIPKQHAEKHfplV--GEATQQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFHRDRADAE 162
                       99*************************653..455668************************************************9988999 PP

                       ..EEEEE-S CS
                B3  91 elvvkvfrk 99 
                       +l+++++r+
  Eucgr.A02625.1.p 163 RLFIGWRRR 171
                       9******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-4364180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3268173IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-2570162No hitNo description
SMARTSM010191.1E-2672172IPR003340B3 DNA binding domain
PfamPF023621.3E-3172171IPR003340B3 DNA binding domain
PROSITE profilePS5086315.00272172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSLNHPLSTS DGTPNTLWWT THPTMFRQHN LLLNFNPTDD DPQDEGSPPP PYVLRGAPPP  60
AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF  120
RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFHRDRAD AERLFIGWRR RGESSPGASA  180
VAAETRVGGG GGGFYAGRPY PGHNDGPSQP GSYTHGQAGG APAAGNNPRR VRLFGVNLEC  240
QLDGDEESEL PGSSHSPTGH GLSSNSSNYT PSHGLHFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-45661712113B3 domain-containing transcription factor NGA1
5os9_B2e-45661712113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02625.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059417.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ9FNI34e-64Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A059DJE90.0A0A059DJE9_EUCGR; Uncharacterized protein
STRINGXP_010059417.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-52B3 family protein