PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02230.1.p
Common NameEUGRSUZ_A02230, LOC104443957
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 256aa    MW: 27898.8 Da    PI: 8.1367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1385131354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L ++v+ +++L
  Eucgr.A02230.1.p  85 KNHKEAEKRRRARINSHLDKLRSLLPCN-----SKTDKATLLAMVVQRVREL 131
                       58*************************8.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-1476137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3782131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-1285134No hitNo description
PfamPF000106.3E-1185131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1386139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.918167244IPR002912ACT domain
Gene3DG3DSA:3.30.70.2603.0E-6169233No hitNo description
SuperFamilySSF550213.89E-5169235No hitNo description
CDDcd048732.43E-6169233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQPESSPEGP SLYQLLAGAG LINVGSYGGG FPVSCEQHQL LPPGGLLQQS FCSSSSNFSY  60
GPFDASANFL SDSGAPEDRT IAALKNHKEA EKRRRARINS HLDKLRSLLP CNSKTDKATL  120
LAMVVQRVRE LKQQASDITA LDMFPSESDE ISVLSSDCSS DGKLIFKASL CCEDRSDLLP  180
DLIEILKSLH LKVQKAEMAT LGGRVRNVLV VAADKDHSVE SIHFLQNALK SLLERSSSAE  240
RSKRRRVLDR KIIMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055825.10.0PREDICTED: transcription factor bHLH106
SwissprotO806744e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A059DHK10.0A0A059DHK1_EUCGR; Uncharacterized protein
STRINGXP_010055825.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]