PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A02149.1.p | ||||||||
Common Name | EUGRSUZ_A02149, LOC104443380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 276aa MW: 30024 Da PI: 6.6451 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48 | 2.1e-15 | 25 | 85 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Eucgr.A02149.1.p 25 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 85 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.6 | 7.2e-35 | 24 | 87 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Eucgr.A02149.1.p 24 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 87 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.256 | 21 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-14 | 22 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.1E-7 | 23 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 25 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.0E-13 | 25 | 85 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 276 aa Download sequence Send to blast |
MEDQSQEPNG SPSHGHERGG GEPVRSRWTP KPEQILILES IFNSGMVNPP KDETVRIRKL 60 LEKFGAVGDA NVFYWFQNRR SRSRRRQRQM QAASLAAATA AAEQRNNNYQ GQQAEGAIHH 120 QCYDGSSSSN MGLASYGSSC SPYSNYSAYG SASSSSSCGV ISQEASDSFF PSFVSHHHVG 180 FPESDQNCTA GLASSFLSHP EAPNMHYHQQ SGIITVFING VPTEVPRGPL DMKSAFGQDA 240 ILVHSSGLPV PTNEYGYLMQ SLEHGESYFL VSRPT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A02149.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF964023 | 0.0 | KF964023.1 Eucalyptus grandis isolate EG5 WOX11 (WOX11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010055044.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 11 | ||||
Swissprot | Q6X7J3 | 3e-67 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A059DHD3 | 0.0 | A0A059DHD3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010055044.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17810.2 | 4e-33 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A02149.1.p |
Entrez Gene | 104443380 |
Publications ? help Back to Top | |||
---|---|---|---|
|