PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02110.1.p | ||||||||
Common Name | EUGRSUZ_A02110, LOC104443016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 34900.8 Da PI: 7.3062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l+ +v++ G g+W+t +++ g+ R++k+c++rw +yl Eucgr.A02110.1.p 29 RGPWTPEEDEVLASYVRREGEGRWRTLPKRAGLQRCGKSCRLRWMNYL 76 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 87 | 127 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.A02110.1.p 87 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 20 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.782 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 26 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 29 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.50E-10 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 77 | 131 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 79 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 81 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-11 | 87 | 127 | No hit | No description |
Pfam | PF00249 | 9.5E-14 | 87 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MRYPAPAPAS RGKSTSTATP CCSKVGIKRG PWTPEEDEVL ASYVRREGEG RWRTLPKRAG 60 LQRCGKSCRL RWMNYLRPSV KRGQIAPDEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK 120 NYWNTHLSKK LISQGIDPRT HKPLLNHNPS SSLAAHLQDT YNASTFTPKA TYPNPTVPVE 180 ETGDENDLKV ADSQLGQPQN AGVAQDHNNE NWQNVEGLTM MNSFGQNYAD HNCNNEDIFS 240 SFLDSLVEDE YTNQYHRGLT AAVPAQFAPG VSFTSAPSFN HGNVTWELPG LRPEVESLGD 300 QQNAVLYNNH LP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 29 | 131 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054687.1 | 0.0 | PREDICTED: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 4e-80 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A059DGK7 | 0.0 | A0A059DGK7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054687.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-82 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02110.1.p |
Entrez Gene | 104443016 |
Publications ? help Back to Top | |||
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