PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A02070.1.p
Common NameEUGRSUZ_A02070, LOC104442593
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 386aa    MW: 42918.2 Da    PI: 8.4187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A02070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.8e-53101441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yL++kv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++
  Eucgr.A02070.1.p  10 LPPGFRFHPTDEELILHYLRRKVTSSPLPV-SIIAEVDIYKLNPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIV 101
                       79****************************.89***************988899*************************************** PP

               NAM  94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++        ++e+ g+kk Lvfykg+ pkg kt+W+mheyrl
  Eucgr.A02070.1.p 102 TSsssasahqHHEKLGVKKALVFYKGKPPKGIKTNWIMHEYRL 144
                       99888877766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-636179IPR003441NAC domain
PROSITE profilePS5100560.61110179IPR003441NAC domain
PfamPF023651.2E-2711144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIMKNPQSSL PPGFRFHPTD EELILHYLRR KVTSSPLPVS IIAEVDIYKL NPWELPAKAA  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKVI VTSSSSASAH QHHEKLGVKK  120
ALVFYKGKPP KGIKTNWIMH EYRLAESPAY NSRPNTNPLK LKDSSMRLDD WVLCRIYKKT  180
NLSPTAGASV ATPDQDLEEE EEEGLSNIHQ NEMLKPFADI PNNHVQNNGG LMSQKSSSFS  240
NLIDALDYSV LSSLLSDNTP QGVGVLGFDQ LAPLIPNNSN HVDITDPHVF GSGTYNNGSS  300
NCFPQKLPQL SPSSSAPFME ENRLKRHRSD ADTAAYQAKK LLSHCSFTNT ASQAADFPQY  360
NLINSYPFLN QQLLLGPNNY AHFHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-72717914165NO APICAL MERISTEM PROTEIN
1ut4_B8e-72717914165NO APICAL MERISTEM PROTEIN
1ut7_A8e-72717914165NO APICAL MERISTEM PROTEIN
1ut7_B8e-72717914165NO APICAL MERISTEM PROTEIN
3swm_A9e-72717917168NAC domain-containing protein 19
3swm_B9e-72717917168NAC domain-containing protein 19
3swm_C9e-72717917168NAC domain-containing protein 19
3swm_D9e-72717917168NAC domain-containing protein 19
3swp_A9e-72717917168NAC domain-containing protein 19
3swp_B9e-72717917168NAC domain-containing protein 19
3swp_C9e-72717917168NAC domain-containing protein 19
3swp_D9e-72717917168NAC domain-containing protein 19
4dul_A8e-72717914165NAC domain-containing protein 19
4dul_B8e-72717914165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A02070.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054307.10.0PREDICTED: NAC transcription factor 25
SwissprotQ84TD61e-108NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A059DHW20.0A0A059DHW2_EUCGR; Uncharacterized protein
STRINGXP_010054307.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-97NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]