PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02065.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 866aa MW: 96090 Da PI: 6.4115 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.8e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Eucgr.A02065.3.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215 99*****************************8544444..48************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Eucgr.A02065.3.p 216 NEKNQLLLGIRRA 228 899999****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.2e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k Eucgr.A02065.3.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-7 | 752 | 849 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.4E-8 | 753 | 835 | No hit | No description |
PROSITE profile | PS51745 | 26.283 | 761 | 846 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MSSEFCPLLA SNAGEKKCLN SELWHACAGP LVSLPPVGSR VVYFPQGHSE QVAASTNKEV 60 DAHIPNYPNL SPQLICQLHN VTMHADVETD EVYAQMTLQP LSPQEQKDLY LLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPSG LPSFHALRDG DMSISSSLMW LQGVGDQGVQ SLNFQGFGMT 420 PWLQPRYDTS MAALQTDVYQ AMASAALQDM RAVDPSKCAS QSLLPLQQSQ NVPMGQASII 480 QRQMLQQSQS QNSLLQGFQE NQATAQGQVL QHPSYNDQRQ QQQQHQQQPQ QSQQFNHTSL 540 QQQMPNIITT LPQYGSIGQS QSSSLPAISQ SQQNIFSDGM ENPIVASDVS PMQSILGSIS 600 RDGSSQLLSV NGSDSMISSS LLKKQNSVEP HLLSEAAHCI LPQVEQLATT HTNVSEFANY 660 LPPFPGREYS AYPGATDPQS SLLFGVNIDS TSLMMQNGMQ HLRNIGSEHD SLSVPFGTSN 720 FASVAGTEFP HNSDMATSSC VDESGFLQSS ENVDQVNPPT RTFVKVHKSG TFGRSLDISK 780 FSSYDELRSE LARMFGLEGQ LEDPQRSGWQ LVFVDRENDI LLLGDDPWQE FVNNVWYIKI 840 LSPHEVKQLG KQGINPANSV PRQAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-164 | 8 | 357 | 39 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02065.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054260.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | W9S1H8 | 0.0 | W9S1H8_9ROSA; Multifunctional fusion protein | ||||
STRING | XP_010054260.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02065.3.p |
Publications ? help Back to Top | |||
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