PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02065.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 869aa MW: 96413.2 Da PI: 6.4471 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 7.8e-24 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Eucgr.A02065.2.p 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 220 99*****************************8544444..48************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Eucgr.A02065.2.p 221 NEKNQLLLGIRRA 233 899999****997 PP | |||||||
2 | Auxin_resp | 110.1 | 2.3e-36 | 258 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnP+ +seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k Eucgr.A02065.2.p 258 AAHAAATNSRFTIFYNPS--PSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 339 79***************7..7**************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-49 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-42 | 125 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-21 | 131 | 232 | No hit | No description |
PROSITE profile | PS50863 | 12.548 | 132 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-24 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-22 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-31 | 258 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-7 | 755 | 852 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.47E-8 | 756 | 838 | No hit | No description |
PROSITE profile | PS51745 | 26.283 | 764 | 849 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 869 aa Download sequence Send to blast |
MRLSSSGFNH QSPEASNAGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS 60 TNKEVDAHIP NYPNLSPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDLYLLPAE 120 LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPSPSEFV IPLAKYVKAV YHTRVSVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDPVRW QNSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS PFPLRLKRPW PSGLPSFHAL RDGDMSISSS LMWLQGVGDQ GVQSLNFQGF 420 GMTPWLQPRY DTSMAALQTD VYQAMASAAL QDMRAVDPSK CASQSLLPLQ QSQNVPMGQA 480 SIIQRQMLQQ SQSQNSLLQG FQENQATAQG QVLQHPSYND QRQQQQQHQQ QPQQSQQFNH 540 TSLQQQMPNI ITTLPQYGSI GQSQSSSLPA ISQSQQNIFS DGMENPIVAS DVSPMQSILG 600 SISRDGSSQL LSVNGSDSMI SSSLLKKQNS VEPHLLSEAA HCILPQVEQL ATTHTNVSEF 660 ANYLPPFPGR EYSAYPGATD PQSSLLFGVN IDSTSLMMQN GMQHLRNIGS EHDSLSVPFG 720 TSNFASVAGT EFPHNSDMAT SSCVDESGFL QSSENVDQVN PPTRTFVKVH KSGTFGRSLD 780 ISKFSSYDEL RSELARMFGL EGQLEDPQRS GWQLVFVDRE NDILLLGDDP WQEFVNNVWY 840 IKILSPHEVK QLGKQGINPA NSVPRQAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 20 | 360 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02065.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054260.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | W9S1H8 | 0.0 | W9S1H8_9ROSA; Multifunctional fusion protein | ||||
STRING | XP_010054260.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02065.2.p |
Publications ? help Back to Top | |||
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