PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01990.1.p | ||||||||
Common Name | EUGRSUZ_A01990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 27297.5 Da PI: 8.564 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.4 | 3.4e-34 | 118 | 175 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s fprsYYrCts+gC+vkk+vers +dp++v++tYeg+Hnh+ Eucgr.A01990.1.p 118 EDGYRWRKYGQKAVKNSAFPRSYYRCTSQGCMVKKRVERSFQDPSIVVTTYEGQHNHH 175 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 102 | 177 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-29 | 110 | 177 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.927 | 112 | 177 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-41 | 117 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-27 | 118 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDYNTLSRAF DMSCCSSSEV ISTDDSTKGA SILSKNNNQS TPKNSSSALS SSSEEMATVG 60 SEDKDKGKII QDEQSTGCHE DHGREEKSKN GDKSKKKEKR PRQPRFAFLT KSEIDNLEDG 120 YRWRKYGQKA VKNSAFPRSY YRCTSQGCMV KKRVERSFQD PSIVVTTYEG QHNHHSPATL 180 RASNFAGMLM PPNLRSTCLM EPPYFQQELL AQLLQMENNR PDDPMSKLYQ NLDPGLQFRL 240 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 110 | 178 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 110 | 178 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01990.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053561.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A059DGX6 | 0.0 | A0A059DGX6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053561.1 | 1e-180 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-44 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01990.1.p |