PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01839.1.p
Common NameEUGRSUZ_A01839, LOC104456856
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 371aa    MW: 41458.3 Da    PI: 6.8543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01839.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08108128526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C  ++r G C++Gd+C FaHg
  Eucgr.A01839.1.p 108 VCAEYRR-GSCSRGDNCEFAHG 128
                       799999*.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-5102132IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5103129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906104130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6108128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4135165IPR000571Zinc finger, CCCH-type
SMARTSM003562.6138161IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.24138162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEVICRRTAS SVAQHQSAAL ESHDVFSSDY SPRVPETPLQ RFLPFNNGGD DEDEDSDPYS  60
SDHFRMFEFK VRRCTRSRSH DWTDCPFAHP GEKARRRDPR KYHYSGTVCA EYRRGSCSRG  120
DNCEFAHGVF ECWLHPSKYR TEACKDGKNC KRKVCFFAHS TRQLRLLPAQ SEPNSPQEIN  180
LEKSKFHSPV SPSSLPHCCL FCHSFTASSP TSTLLGMSHL SPPLSPSQSL SPPLSPLKGR  240
SLSGFSPISR YADRLEPSCL SQGMSYKDVL NEIMTSLDVM KMSEVSPPPH SSPLSSVKNR  300
TAMPWVDVTT SVNEEQTQFI LSPSTPNYPQ VPKNFFGSDP SSNEGIFADK VNEGNSCDDP  360
DIGWVNELLM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01839.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070036.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA16e-89C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A059DH660.0A0A059DH66_EUCGR; Uncharacterized protein
STRINGXP_010070036.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-78C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]