PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01767.1.p | ||||||||
Common Name | EUGRSUZ_A01767, LOC104440195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27746.8 Da PI: 6.2523 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v ++G +W+ +++ g+ R++k+c++rw +yl Eucgr.A01767.1.p 14 KGTWTPEEDRKLKAYVSKYGFWNWRQLPKYAGLSRCGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.3e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++ +v++ +lG++ W++Ia+ ++ gRt++++k++w++ Eucgr.A01767.1.p 67 RGNYTKEEEDTIVRLQGLLGNK-WSAIASQLP-GRTDNEVKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.713 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.22E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-10 | 16 | 61 | No hit | No description |
SMART | SM00717 | 5.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.376 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.30E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MARTPGRDKN GMKKGTWTPE EDRKLKAYVS KYGFWNWRQL PKYAGLSRCG KSCRLRWMNY 60 LRPDIKRGNY TKEEEDTIVR LQGLLGNKWS AIASQLPGRT DNEVKNHWHT NLKKRLNQNT 120 QPSSTTSPQE ATITENHSWD HEAIPNNISD TSPNNILDLP MDGPMTAQIV EGFASLHSSS 180 SSRETSLSLC METVDFSNTE YEASLDTYIA ESSGSFWTEP FITDNNIESW LLLDERSHDV 240 FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01767.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010051469.1 | 0.0 | PREDICTED: myb-related protein Myb4 isoform X1 | ||||
Swissprot | Q7XBH4 | 6e-58 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A059DGA2 | 0.0 | A0A059DGA2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010051469.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-58 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01767.1.p |
Entrez Gene | 104440195 |
Publications ? help Back to Top | |||
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