PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01766.1.p | ||||||||
Common Name | EUGRSUZ_A01766, LOC104456659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27381.6 Da PI: 7.3384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +v ++G +W++ +++ g+ R++k+c++rw +yl Eucgr.A01766.1.p 14 KGTWTPEEDKKLRAYVSRYGYWNWRKLPKYAGLSRCGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++ ++++ +lG++ W++Ia++++ gRt++++k++w++ Eucgr.A01766.1.p 67 RGNYTKEEEDTIIRLQGLLGNK-WSAIASHLP-GRTDNEVKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.025 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.79E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.819 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-10 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MARTPGRDKN GMKKGTWTPE EDKKLRAYVS RYGYWNWRKL PKYAGLSRCG KSCRLRWMNY 60 LRPDIKRGNY TKEEEDTIIR LQGLLGNKWS AIASHLPGRT DNEVKNHWHT NLRKRLSQNT 120 SLTSPQEATI TENRSCDLEV GPKNMSETSP NNIFDFPINC PMPPQIVEGS ASLHLSSSSR 180 ETSLSRCIEA VDFSNTECEA SCDTYIAESS GSFWTEPFIT DNNIESWLSL DESSLDFFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01766.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069815.1 | 1e-179 | PREDICTED: myb-related protein Myb4 isoform X2 | ||||
TrEMBL | A0A059DFF5 | 1e-178 | A0A059DFF5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069815.1 | 1e-179 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 5e-57 | myb domain protein 107 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01766.1.p |
Entrez Gene | 104456659 |