PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01674.1.p
Common NameEUGRSUZ_A01674, LOC104439509
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family E2F/DP
Protein Properties Length: 369aa    MW: 39772.3 Da    PI: 6.2544
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01674.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27115197271
           E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Eucgr.A01674.1.p 115 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsaatpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 197
                       689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1331368IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.3E-46110202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-35114197IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25116197IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-21117198IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.27E-44202305IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.46E-43203318No hitNo description
SMARTSM011381.5E-71204366IPR014889Transcription factor DP, C-terminal
PfamPF087815.4E-41205310IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVIGSSSSNH NHQEDVERNP VAAAGAGAGA AVPRSGGGGG SRSWGTTVSG QSVSTSGSMG  60
SPSSRSEQAM ATPASESTFL RMNHLDIQGD DAGSQGDVGG KKKKRGQRAA AGDKSGRGLR  120
QFSMKVCEKV ESKGRTTYNE VADELVAEFA DPGNSAATPD QQQYDEKNIR RRVYDALNVL  180
MAMDIISKDK KEIQWKGLPR TSLNDIEELK TERHGLRNRI EKKAAYLQEL EEQYVGLQNL  240
IQRNEQLFST GNAPNGGIAL PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDNY  300
VLKAMKFCET PGNDEMVPVF PSDGGEGSSM SGMYQPQPPY PPMSSAAGRP AASPPLPGIL  360
KARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-36108202193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01674.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050871.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-168DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A059DF590.0A0A059DF59_EUCGR; Uncharacterized protein
STRINGXP_010050871.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-138Transcription factor DP