PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01623.1.p
Common NameEUGRSUZ_A01623, LOC104439057
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 755aa    MW: 82726.5 Da    PI: 4.5712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01623.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09598641146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r rW++++ el++++++q+G++  + I + ++ ++t+ q+k+++ k
  Eucgr.A01623.1.p 598 RTRWSKQDTELFYKGIRQFGTD-LSMIKELFP-KLTRQQIKLKFKK 641
                       78********************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.4E-25591674No hitNo description
SMARTSM007177.4E-6597645IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-7599646IPR009057Homeodomain-like
CDDcd001672.23E-4600641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MDPFEDLFPI PAVKRGTAAG KFQPKGRLAL RKPTSSSGTS ILPGKDQKEA ISPSTAVSDT  60
TKSSENIGPK DDRLTDPNAS PLVSLDSFEK MVPRSSESSQ LAVDHMGLVN TSSELVQLDV  120
GTSDALPSDV VVPNQNVEDS FVFEEFNGEM DAGMDDDLIS DILPQPLATS AILPSRDING  180
TRDSDHPASN YIESIGASAS DAAQPHIHSS FCEKETQDMA IDGRGAASVS GDSCIDKDRS  240
ETEGTKTSPD VQPTEGSCER ITASGIGRSE REYILETELQ SGEGKRTFCI TNSEVEPGNL  300
PQDLVLCETH LDQGSAPASI PDDIFDYSSV MLEGSTFGNP TFHEPSHSDT LISTNTVDVS  360
DVPPDSSDHH IETWAASDIR LIQDKSCMSN TVSEGNMSSR QLRKRPTPSQ LVDASDDEAH  420
SDGNNSAEAH SHSPSNGDEP YEGDEYRPRN SSQKRNTPRK PERPLAKKQR EERKKEANKA  480
SEKSTGEPRK KFSHSTRRGK RCVDKVLLQT PEDEIDYRKL PIKDLILLAE HKERLTVKKA  540
KPSKLNSSNQ SSDKSTQGDA SHKEGESFPS EQGNEASSSA EPAPLFFNYQ SFMEKTPRTR  600
WSKQDTELFY KGIRQFGTDL SMIKELFPKL TRQQIKLKFK KEERQNRLGL SEALASRAKD  660
HSHFELVIER LQAAARAGKE SSIDVSASMT AEEEDGESSP ESNEEAEKPA EKLEKDEEIG  720
DEDGKGDAEV HNSLKSDESD DDLFNCLGSY NSEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01623.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050482.10.0PREDICTED: uncharacterized protein LOC104439057 isoform X1
RefseqXP_010050488.10.0PREDICTED: uncharacterized protein LOC104439057 isoform X1
TrEMBLA0A059DF000.0A0A059DF00_EUCGR; Uncharacterized protein
STRINGXP_010050482.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-47MYB_related family protein