PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01575.1.p
Common NameEUGRSUZ_A01575, LOC104438645
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27489.8 Da    PI: 7.8937
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1965118356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+ ++t+eqle Le+ F+++ +++ +++ +L+++lgL+ rq+++WFqNrRa++k
  Eucgr.A01575.1.p  65 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWK 118
                       56789************************************************9 PP
2HD-ZIP_I/II116.61.4e-3765155292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kk++l++eq+++LE+sF+ee kL+p+rK++l+reLglqprq+ +WFqnrRAR+ktkqlE+ y+aLk ++da+++e+ rL++ev++L++ ++
  Eucgr.A01575.1.p  65 KKKKLTSEQLEMLERSFQEEIKLDPDRKMRLSRELGLQPRQITIWFQNRRARWKTKQLERLYDALKLEFDAVSREKLRLQEEVSRLKAMVS 155
                       9*************************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-2040122IPR009057Homeodomain-like
PROSITE profilePS5007117.36260120IPR001356Homeobox domain
SMARTSM003891.1E-1763124IPR001356Homeobox domain
PfamPF000465.2E-1765118IPR001356Homeobox domain
CDDcd000865.12E-1765121No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2167127IPR009057Homeodomain-like
PRINTSPR000316.8E-591100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000316.8E-5100116IPR000047Helix-turn-helix motif
PfamPF021836.2E-8120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDWHGDLRSF SNVSFPESSI GFLNPSFAQY PGMELKHHHH HHPPPLSSSM AEAHNDVVVA  60
ASMDKKKKLT SEQLEMLERS FQEEIKLDPD RKMRLSRELG LQPRQITIWF QNRRARWKTK  120
QLERLYDALK LEFDAVSREK LRLQEEVSRL KAMVSDIQAA KKKQVSTGYT DISGDETVES  180
ARYSGDIRHC SDLTRGAGGG GGVTPTPSTT QHHPLAGSSY QLFTLQDYES NSYWGVLPSS  240
YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01575.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050142.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13 isoform X2
TrEMBLA0A059DFC40.0A0A059DFC4_EUCGR; Uncharacterized protein
STRINGXP_010050142.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.18e-48homeobox 51