PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01371.1.p
Common NameEUGRSUZ_A01371, LOC104437099
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 410aa    MW: 44154.2 Da    PI: 5.1754
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01371.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +C+ ++e++   +C+++  +lC +C  + H+       H++
  Eucgr.A01371.1.p  4 ICEFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                      7*****************************65677777765 PP
2zf-B_box19.81.7e-064690442
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                        C++++++++   C + ++ lC++C   +H g       H+++pl
  Eucgr.A01371.1.p 46 LLCERCNSQPACVRCAEERVSLCQNCDWIGH-GastsastHKRQPL 90
                      57*****************************.55889999998875 PP
3CCT63.94.9e-22352395144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R +a++RYkeK+ktRkF+Kk+rY+sRKa+A+ R RvKGrFvk+ 
  Eucgr.A01371.1.p 352 RSNAVMRYKEKKKTRKFDKKVRYASRKARADVRRRVKGRFVKAG 395
                       899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.613147IPR000315B-box-type zinc finger
CDDcd000213.10E-7447No hitNo description
SMARTSM003366.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5564390IPR000315B-box-type zinc finger
CDDcd000217.96E-54790No hitNo description
SMARTSM003361.24890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.418352394IPR010402CCT domain
PfamPF062031.3E-16352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGYICEFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPACVRC  60
AEERVSLCQN CDWIGHGAST SASTHKRQPL NCYSGCPSAA ELSSIWSFVL DFPSGGESAC  120
EKGMGLMSIA EGNENAACIP PKDSSSQDVS VCADDEAGNA NAWVGSSSLP ELKSASLNMG  180
QLAASASTAT PKACLPITRS PGLFEDDRFY EDFNMDEVDL DLENYDELFG VALTNSELLF  240
ENGGIDSLFG AKEMSAADSN CQGPVVAEGS SSGHAIQPAC SVASAESMMS SKTEPIICFS  300
TRQPHSNLSF SGHIGENNTG DYQDCGASSM ILMGEPPWCT PGPENSFTSA SRSNAVMRYK  360
EKKKTRKFDK KVRYASRKAR ADVRRRVKGR FVKAGDAYDY DPLSQTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01371.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048289.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018729416.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-152COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A059DE800.0A0A059DE80_EUCGR; Uncharacterized protein
STRINGXP_010048289.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-131CONSTANS-like 9