PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01279.1.p
Common NameEUGRSUZ_A01279, LOC104436646
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 743aa    MW: 82996.7 Da    PI: 6.4672
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01279.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3902.7e-1193697401374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+av+++d+  ++++L+++++++sp gd +qRla++++ AL+ar a+++s++yk l +++ts    ++ l+a++lf  ++P+ k+
  Eucgr.A01279.1.p 369 LRTLLINCAQAVAADDHLSTSEFLKQIRQHSSPFGDGNQRLAHCLADALEARQAGTGSQIYKGLISKRTS---AANILKAYHLFLAACPFRKL 458
                       6789************************************************************999998...899***************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       sh+taN++I   ++ + rvHiiDf+i +G+QWp+L+q ++sRp+gpp++RiTg++ p++g   +e++eetg+rLa +Ae ++vpfe+n+ +ak
  Eucgr.A01279.1.p 459 SHFTANRTIRSVASDSMRVHIIDFGILYGFQWPTLMQRFSSRPGGPPKVRITGIDFPQPGfrPAERVEETGRRLAAYAELFKVPFEYNA-IAK 550
                       ***********************************************************9*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++++eeL+++++E l+Vn++++ ++lldesv+ +s r+ v+kl+++++P+v+++   + ++n++ F++rf eal ++salfd+le+ +pr
  Eucgr.A01279.1.p 551 KWETIQVEELKIDKDELLVVNCIYRSKNLLDESVAADSMRNMVIKLIRRINPDVFIHGILNGSYNAPFFVTRFREALFHFSALFDMLETLVPR 643
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       e++er+ +E+e++gre+ nv+aceg er+er et+++W+ r  +aGF + p++ +++k a   ++  + + ++++e+  +l+lgWk+r ++++
  Eucgr.A01279.1.p 644 ENRERMLIEKEMFGREALNVIACEGWERVERPETYKQWQVRNLRAGFVQHPFDRDIVKMATEKVQSSYHKDFMIDESGRWLLLGWKGRIIYAL 736
                       ********************************************************************888********************** PP

              GRAS 371 SaWr 374
                       SaW+
  Eucgr.A01279.1.p 737 SAWK 740
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.758343720IPR005202Transcription factor GRAS
PfamPF035149.4E-117369740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGMDPRFNGY SASVAGLSLD KQSLPWFADP TLVPGDRLET NGFRGGVQYV SSPVATQISG  60
APSASNSCMT QEEDSPEDCD FSDAVLRYIS EMLMEEDMEE KNCMLQESLD LQVAEKSLYE  120
AIGKKYPPSP EPVPNNTYLT GESPEDDLSV NSYGCLMNNP LVSHSCENTS LRQVPSLSLY  180
GLSQSSYASS NSGVGGMDGF VDSPASVAQG PDFSGESHSI WQFNKGVEEA SKFLPGGNRF  240
FDNAVSKGSL TESKVRSSKV AAKLERKDHC ECSPNGSRGR KNPHRGDADL EEERSSKQAA  300
VFSESPLRSD MFDNVLICDE DQDHITVLQE TLQDGRDTVN MLRNGQSKGL KGGKGRGRKQ  360
NGKKEVIDLR TLLINCAQAV AADDHLSTSE FLKQIRQHSS PFGDGNQRLA HCLADALEAR  420
QAGTGSQIYK GLISKRTSAA NILKAYHLFL AACPFRKLSH FTANRTIRSV ASDSMRVHII  480
DFGILYGFQW PTLMQRFSSR PGGPPKVRIT GIDFPQPGFR PAERVEETGR RLAAYAELFK  540
VPFEYNAIAK KWETIQVEEL KIDKDELLVV NCIYRSKNLL DESVAADSMR NMVIKLIRRI  600
NPDVFIHGIL NGSYNAPFFV TRFREALFHF SALFDMLETL VPRENRERML IEKEMFGREA  660
LNVIACEGWE RVERPETYKQ WQVRNLRAGF VQHPFDRDIV KMATEKVQSS YHKDFMIDES  720
GRWLLLGWKG RIIYALSAWK PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-503527411379Protein SCARECROW
5b3h_D8e-503527411379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01279.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047793.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_010047802.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059DEZ80.0A0A059DEZ8_EUCGR; Uncharacterized protein
STRINGXP_010047793.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein