PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01258.1.p | ||||||||
Common Name | EUGRSUZ_A01258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 419aa MW: 45305.2 Da PI: 9.5708 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 5.1e-38 | 160 | 218 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s Eucgr.A01258.1.p 160 GPLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 218 5789**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-32 | 146 | 214 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.7E-32 | 161 | 216 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 162 | 216 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 164 | 200 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MDWSSSARVL GGGTKAMGLV LMDLEIGIRG SSLTSMDLSL AHIKVPSFNF LPLIEFSPFC 60 NSLFVDVILH YSLKKPPLRP LLKRKSILTQ AMDFPSLPPY LDPSNWQQQQ TDHHQTGSSS 120 TNTQLLPPPP QPNGGGGASS IRPRLMADEA RLANITMPEG PLKCPRCEST NTKFCYFNNY 180 SLSQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNNKRSKS GSSKSVASSS HRQITAPRSG 240 STCIPTSNGG ANVDTTEILG VGTQLPPLGH FMAPMNYLPD NLTLSAGAGL NYNTGVPSPL 300 GDLNFLAATT CDGGALERWR LEQAQQLSSS GRLDPNLGLY PSEGRFESFR ALNVRPNAPP 360 SSAGLTAQLS SSVKMEDNNQ PFSRQFYGIN HENHPFLSSA SAWMDLSGFS SSSTRNPL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01258.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047599.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A059DDX9 | 0.0 | A0A059DDX9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047599.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 4e-46 | DNA binding with one finger 2.4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01258.1.p |