PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A01231.1.p

Common Name

EUGRSUZ_A01231

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 165aa MW: 18242.6 Da PI: 10.1516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A01231.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Eucgr.A01231.1.p 28 FECKTCNRRFSSFQALGGHRASH 50 89**********99999998887 PP
2	zf-C2H2	12.9	0.00033	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H Eucgr.A01231.1.p 78 HECSMCGLKFASGQALGGHMRRH 100 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-4	20	52	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.63E-6	24	55	No hit	No description
Pfam	PF13912	3.9E-12	28	52	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	28	50	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.263	28	55	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	30	50	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.27E-6	75	103	No hit	No description
Pfam	PF13912	3.7E-10	78	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.027	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAKCLMLLSH GVNTNPKKAA VHHDEDNFEC KTCNRRFSSF QALGGHRASH KKPRLLETTK 60 LEDCTKLALG SMAKPKMHEC SMCGLKFASG QALGGHMRRH RAELMSGDMM KMDEILAVGS 120 MIPLLKRSNS SKRVMGLDLN LSPLENDLKF LFGKMAPKID PVFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A01231.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010068234.2	1e-114	PREDICTED: zinc finger protein ZAT1
Swissprot	Q9SLD4	3e-45	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A059DDS8	1e-116	A0A059DDS8_EUCGR; Uncharacterized protein
STRING	XP_010068234.1	1e-113	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-47	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A01231.1.p