PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00996.1.p
Common NameEUGRSUZ_A00996, LOC104434276
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 415aa    MW: 45729.6 Da    PI: 7.0095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00996.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ + q+G g+W+++++  g+ R++k+c++rw +yl
  Eucgr.A00996.1.p 14 KGLWSPEEDEKLLRHISQYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP
2Myb_DNA-binding45.41.9e-1467110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Eucgr.A00996.1.p  67 RGAFSQDEEDLIIELHAALGNK-WSQIAANLP-GRTDNEIKNLWNS 110
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.86961IPR017930Myb domain
SuperFamilySSF466893.3E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.74E-121761No hitNo description
PROSITE profilePS5129425.14262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007178.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.8E-1367111IPR001005SANT/Myb domain
CDDcd001673.91E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIS QYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQDEEDLIIE LHAALGNKWS QIAANLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVSHRPLS EVENSDDKDA TSGQTQDKVS RGSVELLSQL NPQFSSSTTA RSSKNSNLMA  180
PTLSKDTVAD GFVSNHQENS MMNSCISDFV DNFSLQQLNY SSSDSRFSNL CFTQTGRAHG  240
NTIFSDFNSN VISAISPPSS NSLFPTASMG FNFKPSNAVP SANSTSSAST GTADFHNSGS  300
YFGNSLVSWG LLADCGSPDK EGSTSIHPLE VHQPGDFKWA AEYLQNPLFM AAALQNQAQE  360
QSNLYNQIKP ETQFPPDHST TSMWDHLQGH ESLDNSLNTC GKDIQRLTAL LGHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
1h8a_C3e-271111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00996.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045543.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A059DCZ10.0A0A059DCZ1_EUCGR; Uncharacterized protein
STRINGXP_010045543.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-90myb domain protein 55