PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00969.1.p
Common NameEUGRSUZ_A00969, LOC104434047
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 598aa    MW: 67071.1 Da    PI: 4.7883
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00969.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-5291361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp GfrF+Ptd+el+++yL+ k++g++ e+ +vi+evd++kvePwdLp  +++++++ ew+fF++rd+ky++g+r nrat++gyWkatgkd++
  Eucgr.A00969.1.p   9 LPLGFRFRPTDQELIDHYLRLKINGRDREV-RVIREVDVCKVEPWDLPdlSAIESRDPEWFFFCPRDRKYPNGHRLNRATTAGYWKATGKDRK 100
                       699************************999.99**************96448888889*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  ++ l+g+kktLvfy+grapkg++t Wvmheyr 
  Eucgr.A00969.1.p 101 IKL-GRDLIGMKKTLVFYTGRAPKGKRTYWVMHEYRT 136
                       ***.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-603159IPR003441NAC domain
PROSITE profilePS5100556.2549159IPR003441NAC domain
PfamPF023658.1E-2710135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAVLPLNSLP LGFRFRPTDQ ELIDHYLRLK INGRDREVRV IREVDVCKVE PWDLPDLSAI  60
ESRDPEWFFF CPRDRKYPNG HRLNRATTAG YWKATGKDRK IKLGRDLIGM KKTLVFYTGR  120
APKGKRTYWV MHEYRTTLEE LDGTHPGQGA FVLCRLFRKQ DETLECPTRD DAEVVVVSPT  180
ANSLPDDTES ELVIAQDGPS VIAQDGPSSA TQDKLPHEDC DLERRQCVLP KNEVNLPQES  240
DLNLLGDAMT HPPLPLPMKE ELETSFMHEV VNAISNHETG VQLQNDKNED DISDFFNSIF  300
NVDYEGPCDE SGQCNLDFGS EIGKNGLIVE DSLLQNDLLQ EATERQSGCQ LEWNGAKDYE  360
IDTLQMGMAR GNFQMGFPDS NFHQDSSAAA SLFGISDASQ SDVRPNSIHL QDLGTSSTDL  420
QSGNPFGTGI RIRSRSSQIL QPQFDHGAQG SAPRRLRIQC KLQIGPLSCS RKPNDFISCD  480
EVKKFKSINA EEEKVFDKLV EGGEDSVGDE SVSSSSSEPR KLTLCDINEE SEVSREIVST  540
QDARSNKQYS RIRLLVSSLF TEGPAIRSGR SRINLFSFFV FLVFSLGAIS AWRYIRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-45816214171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00969.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045303.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A059DDE20.0A0A059DDE2_EUCGR; Uncharacterized protein
STRINGXP_010045303.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-84NAC transcription factor-like 9