PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00903.1.p
Common NameEUGRSUZ_A00903, LOC104433598
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 473aa    MW: 50245.9 Da    PI: 5.9405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00903.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.24.4e-1121104693374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        lLl+cAe+v+ ++l+ a+ lL ++s l+sp g++ +R+aayf+ AL+ar+++s  + y+ l+ ++ +  +s++ ++al+ ++ +sP++kfsh
  Eucgr.A00903.1.p 110 GLLLQCAECVAMDNLADANDLLPEISVLSSPFGSSPERVAAYFAHALQARVVSSFLGSYAPLAGRDLALAQSQRIFHALQSYNSISPLVKFSH 202
                       58******************************************************************99*********************** PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs     +e l +tg+rLa+fA++lg+pfefn++  k  + 
  Eucgr.A00903.1.p 203 FTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSRKIRSVRITGFGS----CSELLGSTGRRLADFASSLGLPFEFNPVEGKIGSL 291
                       ******************************************************....9**************************65555556 PP

              GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                        ++ +L+v+pgEa++V++++  h l+d ++s       +L+l+  l+Pk+++ veq+++h +++Fl rf+eal+yysalfd+l  +l  +s e
  Eucgr.A00903.1.p 292 PDPGRLAVRPGEAVVVHWMH--HCLYDITGSDLA----TLRLLTLLRPKLITTVEQDLSH-GGNFLGRFVEALHYYSALFDALGDGLDGDSVE 377
                       6*****************99..777766666666....9*********************.789***************************** PP

              GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r++vE++llg ei+n+va  g +r+ + + +e+W e l+++GF+pv+l  + a+qa lll +++++gy++ ee g+l lgWkd +L+++SaW+
  Eucgr.A00903.1.p 378 RHVVEQQLLGCEIRNIVAVGGPKRTGEVK-VERWGEELRRVGFRPVSLAGNPAAQAGLLLGMFPWKGYTLVEEGGCLKLGWKDLSLLTASAWQ 469
                       ***********************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.33682449IPR005202Transcription factor GRAS
PfamPF035141.5E-109110469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLQSSLVPQS PIASSSTAPA ALLRPASSSS SMKTKRPDRD RDLPGAGAGS PSSGDDRPSS  60
SKRTHFSGGD DATVSGEKAA SASAAAAEEA ELEPPAPADD GEGSGLRLLG LLLQCAECVA  120
MDNLADANDL LPEISVLSSP FGSSPERVAA YFAHALQARV VSSFLGSYAP LAGRDLALAQ  180
SQRIFHALQS YNSISPLVKF SHFTANQAIF QALDGEDRVH VIDLDIMQGL QWPGLFHILA  240
SRSRKIRSVR ITGFGSCSEL LGSTGRRLAD FASSLGLPFE FNPVEGKIGS LPDPGRLAVR  300
PGEAVVVHWM HHCLYDITGS DLATLRLLTL LRPKLITTVE QDLSHGGNFL GRFVEALHYY  360
SALFDALGDG LDGDSVERHV VEQQLLGCEI RNIVAVGGPK RTGEVKVERW GEELRRVGFR  420
PVSLAGNPAA QAGLLLGMFP WKGYTLVEEG GCLKLGWKDL SLLTASAWQP SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-15911447025380Protein SCARECROW
5b3h_A1e-15911447024379Protein SCARECROW
5b3h_D1e-15911447024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00903.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044705.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A059DD900.0A0A059DD90_EUCGR; Uncharacterized protein
STRINGXP_010044705.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-168GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]