PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00764.1.p
Common NameEUGRSUZ_A00764
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 340aa    MW: 38461.1 Da    PI: 5.7389
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00764.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2645.1e-81333836373
              GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdis...qG 122
                       ++ q+l  y++ AL+++++     +    p+ e     ++e+l +++ ++++sP++ +++l+aN aIlea++++   +++H+i + i+   ++
  Eucgr.A00764.1.p   3 NSKQKLMGYMLSALKSHVSP----IDYPAPVAEL---FTEEHLLSVRSLYDMSPFFGLGFLAANYAILEAASEQpstNKLHVIYLAIGweeEC 88 
                       6889***************9....4433344444...389999*****************************9999999********65559* PP

              GRAS 123 lQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                       l  + L+   + R+ ++  +l+iT+v++ + +s ++l  + +rL+++A++ gv++e n+ v+++l++l+ ++  ++p+E+laVnl+++lhr++
  Eucgr.A00764.1.p  89 LDHLILFYMVSVRQaGNRSTLKITTVED-SFNSGQRLMMLWDRLRDLAAQRGVRLELNI-VSQKLSELSRNSVVFEPDEVLAVNLAFKLHRMP 179
                       *************9555669********.5569*************************9.8******************************** PP

              GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                       desvs e++rde+L+ vk+l P+vv++veqe++ n+++F  r+ eal yy al++ +e+++pr++++r++ E+  l r++vn vaceg++r+e
  Eucgr.A00764.1.p 180 DESVSAENTRDELLRRVKGLAPQVVTLVEQEMNGNTAPFPMRVGEALAYYEALLEYFESTVPRDNSKRAMAEEG-LIRKLVNSVACEGRDRVE 271
                       **************************************************************************.8899************** PP

              GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r+e +e+Wr+r+++aGF+  pl+ ++a++ k  l   + +  ++v+ee+g +++gW++r+L+++SaW
  Eucgr.A00764.1.p 272 RCEVFEEWRARMGMAGFQLKPLGPQVAESLKPWLGCWAwDPRFTVKEENGGFCFGWRGRTLTVASAW 338
                       **************************************8888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.6191318IPR005202Transcription factor GRAS
PfamPF035141.8E-783338IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSNSKQKLMG YMLSALKSHV SPIDYPAPVA ELFTEEHLLS VRSLYDMSPF FGLGFLAANY  60
AILEAASEQP STNKLHVIYL AIGWEEECLD HLILFYMVSV RQAGNRSTLK ITTVEDSFNS  120
GQRLMMLWDR LRDLAAQRGV RLELNIVSQK LSELSRNSVV FEPDEVLAVN LAFKLHRMPD  180
ESVSAENTRD ELLRRVKGLA PQVVTLVEQE MNGNTAPFPM RVGEALAYYE ALLEYFESTV  240
PRDNSKRAMA EEGLIRKLVN SVACEGRDRV ERCEVFEEWR ARMGMAGFQL KPLGPQVAES  300
LKPWLGCWAW DPRFTVKEEN GGFCFGWRGR TLTVASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-302833967375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00764.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039531.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-105SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DDR30.0A0A059DDR3_EUCGR; Uncharacterized protein
STRINGXP_010066918.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.18e-98SCARECROW-like 8