PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00751.1.p
Common NameEUGRSUZ_A00751
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 342aa    MW: 38655.7 Da    PI: 9.0753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00751.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS226.61.2e-69233143312
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L+e+A+a+ +g    a+++L rls l +p  ++ q+l  y++ AL++rl+                    ++++ +++ ++++sP++k+++
  Eucgr.A00751.1.p  23 QPLVEAATAIYEGRVDVASKILRRLSALLNPMSTSKQKLMGYMLSALKSRLFT-------------------EDRVLSVRSLYDLSPCFKLGF 96 
                       679*************************************************8...................467788899************ PP

              GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlva 183
                       ++aN+aIlea++++   +++H+iDfdi+  +Q+  Ll+ L+ R+eg   +l+iT++++  s+  +++l+ +g+rL+  A++++v++ fn+ v+
  Eucgr.A00751.1.p  97 MAANNAILEAASEQpstNKLHVIDFDIGWEGQYYDLLDDLSMRQEGNQfTLKITALAD--SFyGEKRLRMLGDRLSLHAAQVRVRLVFNI-VS 186
                       ************9999999*************************77776*********..44599************************9.8* PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       ++l++ + ++L ++p+E+laVnl+++l+r++desvs e++  e+L+ vk+l P+vv++veqe++ n+++   r+ eal yy  l++s+++++p
  Eucgr.A00751.1.p 187 QKLSESSRDSLGCEPDEVLAVNLAFKLYRMPDESVSAENTHGELLRRVKGLAPRVVTLVEQEMNGNTAPCPMRVEEALAYYGELLESIQSTVP 279
                       ********************************************************************************************* PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetl 312
                       r+++++   E+  l+r++ n+++ceg++r+  ++++
  Eucgr.A00751.1.p 280 RDKSKQERAEKG-LSRKLGNLISCEGRDRISIQRKF 314
                       ************.****************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.0241341IPR005202Transcription factor GRAS
PfamPF035144.0E-6723314IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRSPVESVKP PVQRSPVSIL WEQPLVEAAT AIYEGRVDVA SKILRRLSAL LNPMSTSKQK  60
LMGYMLSALK SRLFTEDRVL SVRSLYDLSP CFKLGFMAAN NAILEAASEQ PSTNKLHVID  120
FDIGWEGQYY DLLDDLSMRQ EGNQFTLKIT ALADSFYGEK RLRMLGDRLS LHAAQVRVRL  180
VFNIVSQKLS ESSRDSLGCE PDEVLAVNLA FKLYRMPDES VSAENTHGEL LRRVKGLAPR  240
VVTLVEQEMN GNTAPCPMRV EEALAYYGEL LESIQSTVPR DKSKQERAEK GLSRKLGNLI  300
SCEGRDRISI QRKFDNKFRY IMNMKISECI ILTRVRIYSH V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-217129269287GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00751.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727334.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR72e-90SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DD220.0A0A059DD22_EUCGR; Uncharacterized protein
STRINGXP_010043392.11e-156(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.16e-86SCARECROW-like 8