PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A00563.1.p | ||||||||
Common Name | EUGRSUZ_A00563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22655.3 Da PI: 10.0577 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 97 | 117 | 6 | 23 |
TT..EEESSHHHHHHHHHH.T CS zf-C2H2 6 Cg..ksFsrksnLkrHirt.H 23 C k Fs+ ++Lk H+r+ H Eucgr.A00563.1.p 97 CEytKYFSNVDYLKDHMRSaH 117 66669*************999 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.6e-05 | 154 | 177 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C C + Fs+ksnL +H + H Eucgr.A00563.1.p 154 CDfeGCQRIFSTKSNLCQHVKAvH 177 77889**************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 16 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 78 | 120 | 141 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.6E-7 | 133 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-6 | 152 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.759 | 152 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0059 | 152 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MIIALNPVKL GPEQHRSKRL FQLVALVPRA LRDLQVQEVP RHFSHPVAPR GEFSSLHCLP 60 MVPKKLGSFW AVSSGATKLR KHEDSHVKLE TVEAFYCEYT KYFSNVDYLK DHMRSAHQLV 120 NCNICGTKQL RKNIQRHLCT HEKKNSADSG AFGCDFEGCQ RIFSTKSNLC QHVKAVHLEV 180 RPFVWAIRIV ARSLHIST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A00563.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034379.1 | 1e-56 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 2e-30 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A059DBP4 | 1e-146 | A0A059DBP4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034379.1 | 6e-56 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 2e-33 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A00563.1.p |