PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00369.1.p
Common NameEUGRSUZ_A00369
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 180aa    MW: 21098.4 Da    PI: 8.4686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00369.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.2e-41121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrF+ tdeel+ +yLk+k+ +++     ++i+e+d++++ePw+Lp+   +  + ke+ fF++ ++ky +++r+nr+tk+gyWk tg+  
  Eucgr.A00369.1.p  12 LPPGFRFQATDEELLLDYLKPKILRQPdGGHYDMIPEIDVLEFEPWQLPSlfGHMFSGKELLFFCHLKRKYLNSNRSNRTTKAGYWKPTGEVL 104
                       79***********************995333477***************5343334789********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s+ +++++g++ktLvfy+gr p+g++t+W+ hey+l
  Eucgr.A00369.1.p 105 TIVSEdTKAKIGIRKTLVFYEGRMPEGKRTNWLKHEYHL 143
                       **99867778****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-419150IPR003441NAC domain
PROSITE profilePS5100542.51612160IPR003441NAC domain
PfamPF023652.6E-2013143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQNTISEVTR SLPPGFRFQA TDEELLLDYL KPKILRQPDG GHYDMIPEID VLEFEPWQLP  60
SLFGHMFSGK ELLFFCHLKR KYLNSNRSNR TTKAGYWKPT GEVLTIVSED TKAKIGIRKT  120
LVFYEGRMPE GKRTNWLKHE YHLNPRCLGN NHAENEVTFW FSFICTMRLV INNIWDMLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-3211436142NO APICAL MERISTEM PROTEIN
1ut4_B2e-3211436142NO APICAL MERISTEM PROTEIN
1ut7_A2e-3211436142NO APICAL MERISTEM PROTEIN
1ut7_B2e-3211436142NO APICAL MERISTEM PROTEIN
3swm_A2e-3211439145NAC domain-containing protein 19
3swm_B2e-3211439145NAC domain-containing protein 19
3swm_C2e-3211439145NAC domain-containing protein 19
3swm_D2e-3211439145NAC domain-containing protein 19
3swp_A2e-3211439145NAC domain-containing protein 19
3swp_B2e-3211439145NAC domain-containing protein 19
3swp_C2e-3211439145NAC domain-containing protein 19
3swp_D2e-3211439145NAC domain-containing protein 19
4dul_A2e-3211436142NAC domain-containing protein 19
4dul_B2e-3211436142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00369.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065034.21e-109PREDICTED: NAC domain-containing protein 83
SwissprotF4JN352e-35NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A059DB681e-132A0A059DB68_EUCGR; Uncharacterized protein
STRINGXP_010065034.11e-108(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.16e-38NAC domain containing protein 71
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]