PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00368.1.p
Common NameEUGRSUZ_A00368, LOC104451638
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 309aa    MW: 35016.1 Da    PI: 4.9759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00368.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.21.9e-41121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrF+ tdeel+ +yLk+k+ g++  +  ++i+e+d++++ePw+Lp+   +  + ke++f+++ ++ky +++r+nr+tk+gyWk tg+  
  Eucgr.A00368.1.p  12 LPPGFRFQATDEELLLDYLKPKILGQPdGRHYDMIPEIDVLEFEPWQLPSlfGHMFSGKELFFYCHLKRKYLNSNRSNRTTKAGYWKPTGEVP 104
                       79*************************6344478***************5343334789********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s+ +++++g++ktLvfy+gr pkg++t+ vmhey l
  Eucgr.A00368.1.p 105 TIVSEdTEAQIGIRKTLVFYEGRMPKGKRTNFVMHEYLL 143
                       *999867788***************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-449168IPR003441NAC domain
PROSITE profilePS5100545.63112168IPR003441NAC domain
PfamPF023652.5E-2013142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNTISEVTR SLPPGFRFQA TDEELLLDYL KPKILGQPDG RHYDMIPEID VLEFEPWQLP  60
SLFGHMFSGK ELFFYCHLKR KYLNSNRSNR TTKAGYWKPT GEVPTIVSED TEAQIGIRKT  120
LVFYEGRMPK GKRTNFVMHE YLLKPKCLGN NHDENEMLPY ALCRIKQKKD KKLMKGHALT  180
ISPGGYSNSH CTDTSNVSET PLNQEGDYLS FCDNLHNEVA DNQEVVYAQP EMSVEELMES  240
LPSSQPPDGI LSYYNTTPAY QPQATAEEGS SSFFDFSHDN DGNEFGHGYM PSPYSNSAYY  300
SGFDCGNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-3411696166NO APICAL MERISTEM PROTEIN
1ut4_B5e-3411696166NO APICAL MERISTEM PROTEIN
1ut7_A5e-3411696166NO APICAL MERISTEM PROTEIN
1ut7_B5e-3411696166NO APICAL MERISTEM PROTEIN
3swm_A6e-3411699169NAC domain-containing protein 19
3swm_B6e-3411699169NAC domain-containing protein 19
3swm_C6e-3411699169NAC domain-containing protein 19
3swm_D6e-3411699169NAC domain-containing protein 19
3swp_A6e-3411699169NAC domain-containing protein 19
3swp_B6e-3411699169NAC domain-containing protein 19
3swp_C6e-3411699169NAC domain-containing protein 19
3swp_D6e-3411699169NAC domain-containing protein 19
4dul_A5e-3411696166NAC domain-containing protein 19
4dul_B5e-3411696166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00368.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064577.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A059DBN10.0A0A059DBN1_EUCGR; Uncharacterized protein
STRINGXP_010064577.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-43NAC transcription factor-like 9