PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00357.1.p
Common NameEUGRSUZ_A00357, LOC104451402
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 309aa    MW: 35097.6 Da    PI: 6.6865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.56e-41111441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       lp+GfrF+Ptdeelv++yLk k+ g+k+ + ++i+evd++++ PwdLp k     ++k++ +ew+fFs+ ++ky+++kr++r+ + g Wk tg
  Eucgr.A00357.1.p  11 LPVGFRFRPTDEELVNQYLKLKTLGNKTVE-QIIPEVDVHQLPPWDLPgKinelsRIKSDGDEWFFFSRLQNKYPQSKRARRTNDYGSWKPTG 102
                       79************************9766.89***************54788887778899******************************* PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++++ ++ k+++ glkk+Lvf k ++pk  +t+Wv+hey++
  Eucgr.A00357.1.p 103 KTHKIRTQdKKNTLGLKKILVFKKRQSPKNAHTKWVLHEYSV 144
                       ******9967778***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-436158IPR003441NAC domain
PROSITE profilePS5100543.84911159IPR003441NAC domain
PfamPF023657.8E-2212144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESVEISLVD LPVGFRFRPT DEELVNQYLK LKTLGNKTVE QIIPEVDVHQ LPPWDLPGKI  60
NELSRIKSDG DEWFFFSRLQ NKYPQSKRAR RTNDYGSWKP TGKTHKIRTQ DKKNTLGLKK  120
ILVFKKRQSP KNAHTKWVLH EYSVLNDQSD FVLYRLKKNP DEKGMKNSKT QKTNTGISIM  180
PQEGSTSNPN LSDEVNNTSI PIMPQEGSRS SQNSPDEVNN TSCSNTLVIA KSMVPEEILK  240
ESLKENVHQP QMPILSPEWN SSQCDFSAAP QPPPAAREQF TPDPGCQDLE SYFADTELLQ  300
EILEMLTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27916313174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00357.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.10.0PREDICTED: protein NTM1-like 9
RefseqXP_010064501.10.0PREDICTED: protein NTM1-like 9
RefseqXP_018725712.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC640.0A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3400222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.32e-43NAC transcription factor-like 9