PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.A00040.1.p

Common Name

EUGRSUZ_A00040, LOC104416003

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 931aa MW: 102528 Da PI: 5.2837

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A00040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.8	2.2e-28	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Eucgr.A00040.1.p 599 AEKTVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.733	583	670	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	603	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-23	823	914	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-24	827	909	No hit	No description
SMART	SM00666	3.9E-20	830	912	IPR000270	PB1 domain
PROSITE profile	PS51745	20.162	830	912	IPR000270	PB1 domain
Pfam	PF00564	2.5E-16	831	911	IPR000270	PB1 domain
CDD	cd06407	1.95E-30	831	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MEYPFSSKEK GMGYWTPPGV QADSSASLDN GMRNSILEDP FVNFAELMNF EGYAGLCNSP 60 STTEQILAPY GLPISPSALY GSLDMMNFAE QSSFYHPDRG GVSNAVGSSY PFVDRLAFQQ 120 TDSQLDYQLD SNDQNDSGAK QGESALGRLG ISDVANNTIC RPLAFSLDEK MLRALSLFKD 180 YSGGGILAQV WVPIKHGDQY ILTTCEQPYL LDKMLEGYRE VSRTFTFSAE GKPGTFLGLP 240 GRVFTSKVPE WTSNVIYYNN SEYLRVKHAV HHNIRGSIAV PVFDSSDKSC CAVLELVTTK 300 EKANFDSEME KVCLALQAVN LRTTPPPRLL PQCLSRNQRD ALAEITDVLR AVCHAHRFPL 360 ALTWIPCCVS EGAADEIVRV RVRDGNGNAN EKCILCVEDT ACYVNDKEME GFVRACAEHY 420 LEEGQGIAGK ALQSNHPFFY PDVKNYDIHE YPLVHHARRF GLNAAVAIRL RSTFTGDDDY 480 ILEFFLPVNI KGSAEQQLLL DNLSRTMQRI CKTLRTVSDA ELFGTDGSKA ELQEVSLPSM 540 SPIPTYGGSH QTVLSDNSTS SIDGRPSNVP TSTRTVSDLP REQVTSLSRR QHEKKRSTAE 600 KTVSLGVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LNSVQGVEGG LKFDPNTGGF VAAGSIQEFD AQKNFIPDKK PAVQGEEASI EEEERSIPFV 720 CGNNSAIKLE DEYCVGGDHL GPSTASLHLL DISHEEAKKS SISQIEYRED SKSTAVDDGI 780 VEHDRPASSS MTDSSDGSGS IMHGSSSSSQ SFEEGKHSKE RTSSHDSGSK VTVKATYKDD 840 TIRFKFEPSD GCFQLYDEVS KRFKLQYGTF QLKYLDDEDE WVMLVSDSDL QECLEIMEYV 900 GTRSVKFLVR DVPAAMGSSG GSNCFLSGCS *

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MEYPFSSKEK GMGYWTPPGV QADSSASLDN GMRNSILEDP FVNFAELMNF EGYAGLCNSP  60
STTEQILAPY GLPISPSALY GSLDMMNFAE QSSFYHPDRG GVSNAVGSSY PFVDRLAFQQ  120
TDSQLDYQLD SNDQNDSGAK QGESALGRLG ISDVANNTIC RPLAFSLDEK MLRALSLFKD  180
YSGGGILAQV WVPIKHGDQY ILTTCEQPYL LDKMLEGYRE VSRTFTFSAE GKPGTFLGLP  240
GRVFTSKVPE WTSNVIYYNN SEYLRVKHAV HHNIRGSIAV PVFDSSDKSC CAVLELVTTK  300
EKANFDSEME KVCLALQAVN LRTTPPPRLL PQCLSRNQRD ALAEITDVLR AVCHAHRFPL  360
ALTWIPCCVS EGAADEIVRV RVRDGNGNAN EKCILCVEDT ACYVNDKEME GFVRACAEHY  420
LEEGQGIAGK ALQSNHPFFY PDVKNYDIHE YPLVHHARRF GLNAAVAIRL RSTFTGDDDY  480
ILEFFLPVNI KGSAEQQLLL DNLSRTMQRI CKTLRTVSDA ELFGTDGSKA ELQEVSLPSM  540
SPIPTYGGSH QTVLSDNSTS SIDGRPSNVP TSTRTVSDLP REQVTSLSRR QHEKKRSTAE  600
KTVSLGVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LNSVQGVEGG LKFDPNTGGF VAAGSIQEFD AQKNFIPDKK PAVQGEEASI EEEERSIPFV  720
CGNNSAIKLE DEYCVGGDHL GPSTASLHLL DISHEEAKKS SISQIEYRED SKSTAVDDGI  780
VEHDRPASSS MTDSSDGSGS IMHGSSSSSQ SFEEGKHSKE RTSSHDSGSK VTVKATYKDD  840
TIRFKFEPSD GCFQLYDEVS KRFKLQYGTF QLKYLDDEDE WVMLVSDSDL QECLEIMEYV  900
GTRSVKFLVR DVPAAMGSSG GSNCFLSGCS *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A00040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026639.1	0.0	PREDICTED: protein NLP8
Refseq	XP_010028556.1	0.0	PREDICTED: protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A059DB61	0.0	A0A059DB61_EUCGR; Uncharacterized protein
STRING	XP_010026047.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.A00040.1.p
Entrez Gene	104416003

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]