PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS785330.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22997 Da PI: 8.5465 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.2 | 3.2e-06 | 24 | 43 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ EcS785330.10 24 FSCPVCSKTFNRYNNMQMHM 43 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F + + ++H +++ EcS785330.10 109 FACRKCSKPFAVRGDWRTHEKNC 131 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.054 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.65E-7 | 24 | 46 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 24 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.242 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 72 | 104 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 95 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.65E-7 | 104 | 129 | No hit | No description |
SMART | SM00355 | 110 | 109 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
NPNLIDGKYW IPSPAQILVG PTQFSCPVCS KTFNRYNNMQ MHMWGHGSQY RKGPDSLKGT 60 KPASSMLRLP CYCCAQGCRN NIDHPRSRPL KDFRTLQTHY KRKHGAKPFA CRKCSKPFAV 120 RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRAFGDGH APHTVEVCEL EEEEEEEEED 180 DGAIEDHYRR IVQGSGYFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046596.1 | 1e-151 | PREDICTED: zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-105 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A059D6K9 | 1e-150 | A0A059D6K9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046596.1 | 1e-150 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-107 | C2H2-like zinc finger protein |